1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgcctgtgtcagtgtagctactttcccctaatttgggaacgtaagttttcaggtcatctccactatgcgctatgtagtaatgatatttggatgtgtgcagCTTCTGAAGGAGAAAAAGTTGCTGCGTGCCTTCCCTCACGAGGTGGACGATGTCGTGATGGCTTTGGATGATTCATTAAAGATTCCTGCAGCAGGAATCG
species | Physcomitrella patens |
transcript | PP1S407_7V6.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAGACACGCCTGCTTGTGGATTTGGTTTTGGTGATGCTGTTATTGTTGAG CTTCTGAAGGAGAAAAAGTTGCTGCGTGCCTTCCCTCACGAGGTGGACGATEST: gi|67724906|gb|BJ975165.1|BJ975165
genomic: AAGACACGCCTGCTTGTGGATTTGGTTTTGGTGATGCTGTTATTGTTGAGgttagcaagc ... atgtgtgcagCTTCTGAAGGAGAAAAAGTTGCTGCGTGCCTTCCCTCACGAGGTGGACGAT
EST: AAGACACGCCTGCTTGTGGATTTGGTTTTGGTGATGCTGTTATTGTTGAG CTTCTGAAGGAGAAAAAGTTGCTGCGTGCCTTCCCTCACGAGGTGGACGATEST: gi|208379607|gb|DC927104.1|DC927104
genomic: AAGACACGCCTGCTTGTGGATTTGGTTTTGGTGATGCTGTTATTGTTGAGgttagcaagc ... atgtgtgcagCTTCTGAAGGAGAAAAAGTTGCTGCGTGCCTTCCCTCACGAGGTGGACGAT
EST: AAGACACGCCTGCTTGTGGATTTGGTTTTGGTGATGCTGTTATTGTTGAG CTTCTGAAGGAGAAAAAGTTGCTGCGTGCCTTCCCTCACGAGGTGGACGATEST: gi|67726712|gb|BJ976971.1|BJ976971
genomic: AAGACACGCCTGCTTGTGGATTTGGTTTTGGTGATGCTGTTATTGTTGAGgttagcaagc ... atgtgtgcagCTTCTGAAGGAGAAAAAGTTGCTGCGTGCCTTCCCTCACGAGGTGGACGAT
EST: AAGACACGCCTGCTTGTGGATTTGGTTTTGGTGATGCTGTTATTGTTGAG CTTCTGAAGGAGAAAAAGTTGCTGCGTGCCTTCCCTCACGAGGTGGACGAT
genomic: AAGACACGCCTGCTTGTGGATTTGGTTTTGGTGATGCTGTTATTGTTGAGgttagcaagc ... atgtgtgcagCTTCTGAAGGAGAAAAAGTTGCTGCGTGCCTTCCCTCACGAGGTGGACGAT
ttttcaggtcatctccactatgcgctatgtagtaatgatatttggatgtgtgcagCTTCTGAAGGAGAAAAAGTTGCTGCGTGCCTTCCCTCACGAGGTGGACGATGTCGTGATGGCTTTGGATGATTCATTAAAGATTCCTGCAGCAGGAATCG
tagtaatgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcctgtgtcagtgtagctactttcccctaatttgggaacgtaagttttcaggtcatctccactatgcgctatgtagtaatgatatttggatgtgtgcagCTTCTGAAGGAGAAAAAGTTGCTGCGTGCCTTCCCTCACGAGGTGGACGATGTCGTGATGGCTTTGGATGATTCATTAAAGATTCCTGCAGCAGGAATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG