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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttttcgcgatttgtgtagcgtgctaagtgacttcgcaaaacacttagaaaagtcgctcgctaccctgtcgtaatttctgaggtttacctctcctgcagGTACAAACGCTTGGAGGACACACCAATGAAAAGAATTTTGTGGGGCTTACTGTAAATAGTGACTACATCGCTTGTGGCAGTGAAACGAGCGAGGTTTTTG

Basic information

species Physcomitrella patens
transcript PP1S37_28V6.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S37_28V6.1 (Physcomitrella patens), 3'ss of exon 11
lower sequence: Vv10s0523g00030.t01 (Vitis vinifera), 3'ss of exon 11
------------------------------------------------------------------ctttttcgcgatttgtgtagcgtgctaagtgac----ttcgcaaaacacttagaaaa------gtcgctcg-----ctaccctgtcgtaatttctgaggtttacctctcctgcagGTACAAACGCTTGGAGGACACACCAATGAAAAGAATTTTGTGGGGCTTACTGTAAATAGTGACTACATCGCTTGTGGCAGTGAAACGAGCGAGGTTTTTG
                                                                   |   |  | |||| | |||   | | |    |    || ||||||   |  | |||       | |  ||     |||     ||  |||| ||      ||  | | ||  |||| |  ||  || |||| ||  | ||||| |||||||||||||| || || ||||| || || ||||| || |||||||||||||| | ||| || || |
gtaagttattatgtttttattgtttattttgttctatccccgcattataaatccctctgtatggtgatacctgccaatttttttagtacgttgaccatccatttttgcaaaatcttgtggaaattacatatggtacgaacaactaattcatctcaattcctttttcataatttttct-tagGTTCGCACATTTAGAGGGCATTCAAATGAGAAGAATTTTGTGGGTCTCACAGTAAACAGCGAATACATTGCCTGTGGCAGTGAAACAAACGAAGTGTTCG

upper sequence: PP1S37_28V6.1 (Physcomitrella patens), 3'ss of exon 11
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 3'ss of exon 11
ctttttcgcgatttgtgtagcgtgctaagtgacttcgcaa----aacacttagaaaagt-cgctcgctaccctgtcgtaatttctgaggtttacctctcctgcagGTACAAACGCTTGGAGGACACACCAATGAAAAGAATTTTGTGGGGCTTACTGTAAATAGTGACTACATCGCTTGTGGCAGTGAAACGAGCGAGGTTTTTG
||||||| | |||     |      |  | |||||| | |    |||  ||  |  | |    ||   |   |        |||  |||  |     |     |||| |  ||  |  |||||||||| ||||| ||||| || ||||| ||  ||||||| ||||| || ||  |||||||||||||||| | ||| || || |
ctttttcccaattcagtaacttcattttgagacttctctattccaacttttgaattattattttcaagaaattaaaactcattccaaggggtgttctt-----agGTTCGCACCTTCAGAGGACACACTAATGAGAAGAACTTCGTGGGCCTCTCTGTAAACAGTGAATATATTTCTTGTGGCAGTGAAACAAACGACGTCTTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagaaaagtcgctcgctaccctgtcgtaatttctgaggtttacctctcctgcagGTACAAACGCTTGGAGGACACACCAATGAAAAGAATTTTGTGGGGCTTACTGTAAATAGTGACTACATCGCTTGTGGCAGTGAAACGAGCGAGGTTTTTG
                                       tttacctctcctgc  CT-rich tract
                           taatttct  TA-rich tract