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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagtggtcctgttgttttagaagctatcgtggcagtgccttagttttggatcttcttgtgatgttattggcatggctcaaggcccttagtccatttcctattctggtaagaacggatttctttttatttctttgcagCCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCAAAGACTAGCTTCAAAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCG

Basic information

species Physcomitrella patens
transcript PP1S35_94V6.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162239089|gb|FC416228.1|FC416228
EST:     CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAG                         CCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
genomic: CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAGgtacagtggt ... ttctttgcagCCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
EST: gi|19786466|gb|BQ040483.1|BQ040483
EST:     CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAG                         CCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
genomic: CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAGgtacagtggt ... ttctttgcagCCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
EST: gi|67692532|gb|BJ952765.1|BJ952765
EST:     CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAG                         CCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
genomic: CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAGgtacagtggt ... ttctttgcagCCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
EST: gi|162195483|gb|FC370900.1|FC370900
EST:     CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAG                         CCACAAGCAAGAGCGTT
genomic: CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAGgtacagtggt ... ttctttgcagCCACAAGCAAGAGCGTT
EST: gi|162195482|gb|FC370899.1|FC370899
EST:     CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAG                         CCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
genomic: CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAGgtacagtggt ... ttctttgcagCCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
EST: gi|162185503|gb|FC362572.1|FC362572
EST:     CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAG                         CCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
genomic: CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAGgtacagtggt ... ttctttgcagCCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
EST: gi|162185502|gb|FC362571.1|FC362571
EST:     CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAG                         CCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
genomic: CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAGgtacagtggt ... ttctttgcagCCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
EST: gi|162167618|gb|FC343750.1|FC343750
EST:     CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAG                         CCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
genomic: CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAGgtacagtggt ... ttctttgcagCCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
EST: gi|162170368|gb|FC346773.1|FC346773
EST:     CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAG                         CCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
genomic: CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAGgtacagtggt ... ttctttgcagCCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
EST: gi|208380575|gb|DC919361.1|DC919361
EST:     CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAG                         CCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
genomic: CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAGgtacagtggt ... ttctttgcagCCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
EST: gi|162166908|gb|FC343293.1|FC343293
EST:     CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAG                         CCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
genomic: CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAGgtacagtggt ... ttctttgcagCCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
EST: gi|162239088|gb|FC416227.1|FC416227
EST:     CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAG                         CCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA
genomic: CCGCGGCCTGTTTCACGCACCCTGAGATCAGCATGGTTGGCTTGACTGAGgtacagtggt ... ttctttgcagCCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccttagtccatttcctattctggtaagaacggatttctttttatttctttgcagCCACAAGCAAGAGCGTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCAAAGACTAGCTTCAAAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCG
                                  tttctttttatttctt  CT-rich tract
                                 atttctttttatttct  TA-rich tract