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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttgttcttttatctttcaaaactttttaatttcttaaaattaattaaccagattttcatatattgataagatcgtttttaccttggaattgggtccagGGTGTACATTGTTCTACGAAATTTATCGCAGTCACTTCGCAACTATTCCCTCACCCTCTTTGC

Basic information

species Physcomitrella patens
transcript PP1S357_34V6.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37822242|gb|BJ580308.1|BJ580308
EST:     AAGACTTCCTATAACAAGCTGCACCCTTACACGTCATGGATCCCTATCAC                         GGTGTACATTGTTCTACGAAATTTATCGCAGTCACTTCGCAACTATTCCCT
genomic: AAGACTTCCTATAACAAGCTGCACCCTTACACGTCATGGATCCCTATCACgtacgccctt ... ttgggtccagGGTGTACATTGTTCTACGAAATTTATCGCAGTCACTTCGCAACTATTCCCT
EST: gi|208368050|gb|DC955429.1|DC955429
EST:     AAGACTTCCTATAACAAGCTGCACCCTTACACGTCATGGATCCCTATCAC                         GGTGTACATTGTTCTACGAAATTTATCGCAGTCACTTCGCAACTATTCCCT
genomic: AAGACTTCCTATAACAAGCTGCACCCTTACACGTCATGGATCCCTATCACgtacgccctt ... ttgggtccagGGTGTACATTGTTCTACGAAATTTATCGCAGTCACTTCGCAACTATTCCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaccagattttcatatattgataagatcgtttttaccttggaattgggtccagGGTGTACATTGTTCTACGAAATTTATCGCAGTCACTTCGCAACTATTCCCTCACCCTCTTTGC
                 tattgat  putative branch site (score: 3)
        attttcatatattgat  TA-rich tract