1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagctgtcactgctgttcccttctttctttagaaattgatagaaatgcatagttctcggttaaattataagcacattcgtgattgtttaaaacactaatgtttttttgtgtaaacttttgacagGAGGGTACTGCAAATTATTTCAAGGGTTTAATGTTAATATTATGCTACCTAATAGTTGGAGCAAGCTTCTTTGTCCATGTCGACATTCCAGACAAGCATC
species | Physcomitrella patens |
transcript | PP1S336_18V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAACCGCAACACTATTCATAACAGTTCTAGTGGTTGCTTTCATGCTTCAG GAGGGTACTGCAAATTATTTCAAGGGTTTAATGTTAATATTATGCTACCTAEST: gi|37835126|gb|BJ593138.1|BJ593138
genomic: AAACCGCAACACTATTCATAACAGTTCTAGTGGTTGCTTTCATGCTTCAGgtgagctgtc ... cttttgacagGAGGGTACTGCAAATTATTTCAAGGGTTTAATGTTAATATTATGCTACCTA
EST: AAACCGCAACACTATTCATAACAGTTCTAGTGGTTGCTTTCATGCTTCAG GAGGGTACTGCAAATTATTTCAAGGGTTTAATGTTAATATTATGCTACCTAEST: gi|37843582|gb|BJ601590.1|BJ601590
genomic: AAACCGCAACACTATTCATAACAGTTCTAGTGGTTGCTTTCATGCTTCAGgtgagctgtc ... cttttgacagGAGGGTACTGCAAATTATTTCAAGGGTTTAATGTTAATATTATGCTACCTA
EST: AACCGCAACACTAATTCATAACAGTTCTAGTGGTTGCTTTCATGCTTCAG GAGGGTACTGCAAATTATTTCAAGGGTTTAATGTTAATATTATGCTACCTAEST: gi|162155093|gb|FC330887.1|FC330887
genomic: AACCGCAACACT-ATTCATAACAGTTCTAGTGGTTGCTTTCATGCTTCAGgtgagctgtc ... cttttgacagGAGGGTACTGCAAATTATTTCAAGGGTTTAATGTTAATATTATGCTACCTA
EST: AAACCGCAACACTATTCATAACAGTTCTAGTGGTTGCTTTCATGCTTCAG GAGGGTACTGCAAATTATTTCAAGGGTTTAATGTTAATATTATGCTACCTAEST: gi|162267366|gb|FC443909.1|FC443909
genomic: AAACCGCAACACTATTCATAACAGTTCTAGTGGTTGCTTTCATGCTTCAGgtgagctgtc ... cttttgacagGAGGGTACTGCAAATTATTTCAAGGGTTTAATGTTAATATTATGCTACCTA
EST: AAACCGCAACACTATTCATAACAGTTCTAGTGGTTGCTTTCATGCTTCAG GAGGGTACTGCAAATTATTTCAAGGGTTTAATGTTAATATTATGCTACCTAEST: gi|37829099|gb|BJ587111.1|BJ587111
genomic: AAACCGCAACACTATTCATAACAGTTCTAGTGGTTGCTTTCATGCTTCAGgtgagctgtc ... cttttgacagGAGGGTACTGCAAATTATTTCAAGGGTTTAATGTTAATATTATGCTACCTA
EST: AAACCGCAACACTATTCATAACAGTTCTAGTGGTTGCTTTCATGCTTCAG GAGGGTACTGCAAATTATTTCAAGGGTTTAATGTTAATATTATGCTACCTA
genomic: AAACCGCAACACTATTCATAACAGTTCTAGTGGTTGCTTTCATGCTTCAGgtgagctgtc ... cttttgacagGAGGGTACTGCAAATTATTTCAAGGGTTTAATGTTAATATTATGCTACCTA
agcacattcgtgattgtttaaaacactaatgtttttttgtgtaaacttttgacagGAGGGTACTGCAAATTATTTCAAGGGTTTAATGTTAATATTATGCTACCTAATAGTTGGAGCAAGCTTCTTTGTCCATGTCGACATTCCAGACAAGCATC
cactaat putative branch site (score: 2)
ctttt putative PPT
tttaaaacactaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctgtcactgctgttcccttctttctttagaaattgatagaaatgcatagttctcggttaaattataagcacattcgtgattgtttaaaacactaatgtttttttgtgtaaacttttgacagGAGGGTACTGCAAATTATTTCAAGGGTTTAATGTTAATATTATGCTACCTAATAGTTGGAGCAAGCTTCTTTGTCCATGTCGACATTCCAGACAAGCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT