1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tactgacatgtatcattcgaatttatttgtcctgctctgtttcatgttatacgaggatgtagtggtcaattttctaatttaggattatgattgtgcctagGCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAATCGACAAGGCATTTATGTTCTTCCTAAGTCAAGAAGTTTTCGGGACGAGG
species | Physcomitrella patens |
transcript | PP1S334_25V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATGGTAATGTTTATTGTTTCCAGACACCTGCTCCACATCACCCTCTCAAG GCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAATEST: gi|162216337|gb|FC392130.1|FC392130
genomic: ATGGTAATGTTTATTGTTTCCAGACACCTGCTCCACATCACCCTCTCAAGgtacctaaaa ... ttgtgcctagGCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAAT
EST: ATGGTAATGTTTATTGTTTCCAGACACCTGCTCCACATCACCCTCTCAAG GCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAATEST: gi|208365360|gb|DC954801.1|DC954801
genomic: ATGGTAATGTTTATTGTTTCCAGACACCTGCTCCACATCACCCTCTCAAGgtacctaaaa ... ttgtgcctagGCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAAT
EST: ATGGTAATGTTTATTGTTTCCAGACACCTGCTCCACATCACCCTCTCAAG GCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAATEST: gi|162216336|gb|FC392129.1|FC392129
genomic: ATGGTAATGTTTATTGTTTCCAGACACCTGCTCCACATCACCCTCTCAAGgtacctaaaa ... ttgtgcctagGCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAAT
EST: ACATCACCCTCTCAAG GCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAATEST: gi|162174410|gb|FC350481.1|FC350481
genomic: ACATCACCCTCTCAAGgtacctaaaa ... ttgtgcctagGCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAAT
EST: ATGGTAATGTTTATTGTTTCCAGACACCTGCTCCACATCACCCTCTCAAG GCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAAT
genomic: ATGGTAATGTTTATTGTTTCCAGACACCTGCTCCACATCACCCTCTCAAGgtacctaaaa ... ttgtgcctagGCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAAT
gttatacgaggatgtagtggtcaattttctaatttaggattatgattgtgcctagGCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAATCGACAAGGCATTTATGTTCTTCCTAAGTCAAGAAGTTTTCGGGACGAGG
ttctaat putative branch site (score: 2)
aattttctaatttagg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactgacatgtatcattcgaatttatttgtcctgctctgtttcatgttatacgaggatgtagtggtcaattttctaatttaggattatgattgtgcctagGCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAATCGACAAGGCATTTATGTTCTTCCTAAGTCAAGAAGTTTTCGGGACGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT