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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttgggttatgtgtttggctttttcgattgtgcatcttggtgggcatcgtggtggaactcggtaggatatatggtagtttcgttctgactatcgtgtgaatgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCTCTACTAGGGATTGAAGCAGTCTGCACGCGGCTAACATGGGAAGCCTTTA

Basic information

species Physcomitrella patens
transcript PP1S309_84V6.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37851432|gb|BJ609440.1|BJ609440
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|37848291|gb|BJ606299.1|BJ606299
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|37842046|gb|BJ600054.1|BJ600054
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|67700011|gb|BJ960244.1|BJ960244
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|208388689|gb|DC953451.1|DC953451
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|67726344|gb|BJ976603.1|BJ976603
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|37836773|gb|BJ594781.1|BJ594781
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|37831794|gb|BJ589806.1|BJ589806
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|208362874|gb|DC950824.1|DC950824
EST:     GNCAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGCGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|18341262|gb|BJ173296.1|BJ173296
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|67725319|gb|BJ975578.1|BJ975578
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAATGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|208368330|gb|DC955527.1|DC955527
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|37830651|gb|BJ588663.1|BJ588663
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|208371893|gb|DC951711.1|DC951711
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|208362848|gb|DC950798.1|DC950798
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|67726181|gb|BJ976440.1|BJ976440
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|208386536|gb|DC952745.1|DC952745
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|208388805|gb|DC945381.1|DC945381
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|208368880|gb|DC947438.1|DC947438
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|37848398|gb|BJ606406.1|BJ606406
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|208369277|gb|DC956068.1|DC956068
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|67724340|gb|BJ974599.1|BJ974599
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|67725809|gb|BJ976068.1|BJ976068
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|37842054|gb|BJ600062.1|BJ600062
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|37824920|gb|BJ582986.1|BJ582986
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|67722676|gb|BJ972935.1|BJ972935
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|67698388|gb|BJ958621.1|BJ958621
EST:     GACAAGTTCGTGAAGTNGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|208360362|gb|DC950003.1|DC950003
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|37827902|gb|BJ585914.1|BJ585914
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|37844908|gb|BJ602916.1|BJ602916
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|67723795|gb|BJ974054.1|BJ974054
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|67696731|gb|BJ956964.1|BJ956964
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|67720154|gb|BJ970413.1|BJ970413
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|37851983|gb|BJ609991.1|BJ609991
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|67724127|gb|BJ974386.1|BJ974386
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|37833256|gb|BJ591268.1|BJ591268
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|67723853|gb|BJ974112.1|BJ974112
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|162271002|gb|FC447407.1|FC447407
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|67720688|gb|BJ970947.1|BJ970947
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|208361174|gb|DC954280.1|DC954280
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|208361238|gb|DC957707.1|DC957707
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|37841608|gb|BJ599616.1|BJ599616
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
EST: gi|208373682|gb|DC952507.1|DC952507
EST:     GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         TAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT
genomic: GACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 28 (upstream exon), 35 (downstream exon)
Score: 16

GTCGAGCATCTTCGATGCTAAGGCAGGAATTGCCTTGAGCGACAAGTTCGTGAAGTTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaatttggg ... tgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCTCTACTAGGGATTGAAGCAGTCTGCACGCGGCTAACATGGGAAGCCTTTA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactcggtaggatatatggtagtttcgttctgactatcgtgtgaatgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCTCTACTAGGGATTGAAGCAGTCTGCACGCGGCTAACATGGGAAGCCTTTA
                           ttctgac  putative branch site (score: 16)
           atatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatttgggttatgtgtttggctttttcgattgtgcatcttggtgggcatcgtggtggaactcggtaggatatatggtagtttcgttctgactatcgtgtgaatgtcttgcagTAACCGAGTTGTGGACTTGATCTTGCACATGGCTGGAGTAAAAGCCAACCTCTACTAGGGATTGAAGCAGTCTGCACGCGGCTAACATGGGAAGCCTTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC