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gtgagatgttgtttgattaccgaagcaattaagcataattaaacacaataaaataaattaaaataacctgatttcatttaggtttgctctttctacgcagaatatatgtatcttcgagaaatttgtatgagtcatatgatattttgagacttatttcctgagccacttgactatcagGATACGATGATGATGGGAGCTGATTTTTACGATACCGAGAAGGAAGTTGCAGATATGTTAAGGAATGGAAAGATTCCCCTAGGAGTTGGTGAAAATTCCA
species | Physcomitrella patens |
transcript | PP1S2_204V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATTCAATTGTTGGTGTTCGATCTCGTCTGGAGTCCGGTTCTGTCTTGAAG GATACGATGATGATGGGAGCTGATTTTTACGATACCGAGAAGGAAGTTGCAEST: gi|162153553|gb|FC330141.1|FC330141
genomic: ATTCAATTGTTGGTGTTCGATCTCGTCTGGAGTCCGGTTCTGTCTTGAAGgtgagatgtt ... tgactatcagGATACGATGATGATGGGAGCTGATTTTTACGATACCGAGAAGGAAGTTGCA
EST: ATTCAATTGTTGGTGTTCGATCTCGTCTGGAGTCCGGTTCTGTCTTGAAG GATACGATGATGATGGGAGCTGATTTTTACGATACCGAGAAGGAAGTTGCAEST: gi|162185890|gb|FC360990.1|FC360990
genomic: ATTCAATTGTTGGTGTTCGATCTCGTCTGGAGTCCGGTTCTGTCTTGAAGgtgagatgtt ... tgactatcagGATACGATGATGATGGGAGCTGATTTTTACGATACCGAGAAGGAAGTTGCA
EST: ATTCAATTGTTGGTGTTCGATCTCGTCTGGAGTCCGGTTCTGTCTTGAAG GATACGATGATGATGGGAGCTGATTTTTACGATACCGAGAAGGAAGTTGCAEST: gi|162173431|gb|FC349810.1|FC349810
genomic: ATTCAATTGTTGGTGTTCGATCTCGTCTGGAGTCCGGTTCTGTCTTGAAGgtgagatgtt ... tgactatcagGATACGATGATGATGGGAGCTGATTTTTACGATACCGAGAAGGAAGTTGCA
EST: ATTCAATTGTTGGTGTTCGATCTCGTCTGGAGTCCGGTTCTGTCTTGAAG GATACGATGATGATGGGAGCTGATTTTTACGATACCGAGAAGGAAGTTGCAEST: gi|67693988|gb|BJ954221.1|BJ954221
genomic: ATTCAATTGTTGGTGTTCGATCTCGTCTGGAGTCCGGTTCTGTCTTGAAGgtgagatgtt ... tgactatcagGATACGATGATGATGGGAGCTGATTTTTACGATACCGAGAAGGAAGTTGCA
EST: ATTCAATTGTTGGTGTTCGATCTCGTCTGGAGTCCGGTTCTGTCTTGAAG GATACGATGATGATGGGAGCTGATTTTTACGATACCGAGAAGGAAGTTGCAEST: gi|162153552|gb|FC330140.1|FC330140
genomic: ATTCAATTGTTGGTGTTCGATCTCGTCTGGAGTCCGGTTCTGTCTTGAAGgtgagatgtt ... tgactatcagGATACGATGATGATGGGAGCTGATTTTTACGATACCGAGAAGGAAGTTGCA
EST: ATTCAATTGTTGGTGTTCGATCTCGTCTGGAGTCCGGTTCTGTCTTGAAG GATACGATGATGATGGGAGCTGATTTTTACGATACCGAGAAGGAAGTTGCA
genomic: ATTCAATTGTTGGTGTTCGATCTCGTCTGGAGTCCGGTTCTGTCTTGAAGgtgagatgtt ... tgactatcagGATACGATGATGATGGGAGCTGATTTTTACGATACCGAGAAGGAAGTTGCA
ttgtatgagtcatatgatattttgagacttatttcctgagccacttgactatcagGATACGATGATGATGGGAGCTGATTTTTACGATACCGAGAAGGAAGTTGCAGATATGTTAAGGAATGGAAAGATTCCCCTAGGAGTTGGTGAAAATTCCA
acttgac putative branch site (score: 4)
tcatatgatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatgttgtttgattaccgaagcaattaagcataattaaacacaataaaataaattaaaataacctgatttcatttaggtttgctctttctacgcagaatatatgtatcttcgagaaatttgtatgagtcatatgatattttgagacttatttcctgagccacttgactatcagGATACGATGATGATGGGAGCTGATTTTTACGATACCGAGAAGGAAGTTGCAGATATGTTAAGGAATGGAAAGATTCCCCTAGGAGTTGGTGAAAATTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA