1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgtgtcacttttcgaacaaatctcacactccccttcgtttgctttgtcatgcaagttttgctcttggctagatcatcaaattgaagcttgatttgtctaacattattggtttcgtgttcaatatgtaccagTTCAACGACATCCTCAATGTCTTCTTCTCCTCTTCCGTGATTGTATGCTTCGTAGTGGCGACCGTCCTGGACACTACTCTCACCCGTCACGTGTCCAAGA
species | Physcomitrella patens |
transcript | PP1S297_61V6.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGTNTTCGATGCGTGCTGGACATGGCCCCGTGCACACAAATTCCCGATGG TTCAACGACATCCTCAATGTCTTCTTCTCCTCTTCCGTGATTGTATGCTTCEST: gi|18339947|gb|BJ171975.1|BJ171975
genomic: AGTTTTCGATGCGTGCTGGACATGGCCCCGTGCACACAAATTCCCGATGGgtgtgtcact ... tatgtaccagTTCAACGACATCCTCAATGTCTTCTTCTCCTCTTCCGTGATTGTATGCTTC
EST: AGTTTTCGATGCGTGCTGGACATGGCCCCGTGCACACAAATTCCCGATGG TTCAACGACATCCTCAATGTCTTCTTCTCCTCTTCCGTGATTGTATGCTTC
genomic: AGTTTTCGATGCGTGCTGGACATGGCCCCGTGCACACAAATTCCCGATGGgtgtgtcact ... tatgtaccagTTCAACGACATCCTCAATGTCTTCTTCTCCTCTTCCGTGATTGTATGCTTC
caaattgaagcttgatttgtctaacattattggtttcgtgttcaatatgtaccagTTCAACGACATCCTCAATGTCTTCTTCTCCTCTTCCGTGATTGTATGCTTCGTAGTGGCGACCGTCCTGGACACTACTCTCACCCGTCACGTGTCCAAGA
gtctaac putative branch site (score: 3)
taacattatt TA-rich tract