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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgcaaaggatatttttgctgatttcaaacctgtacctcctatattttcggacaacgtgtcgtgacatcttatttgaaattgtggactacaacagactctgaattgtgcatctaactacctatctgctcaacttgcgtagGTTTTTAGTGTTTTCAAATCGAACAATATCAATGTACAAATGATCTCACAAGGTGCCTCGAAG

Basic information

species Physcomitrella patens
transcript PP1S286_35V6.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18336593|gb|BJ168615.1|BJ168615
EST:     TTATCTCTCTTATTAGTAACGTGAAGCAGTCATCAGCGGTTCTTGAAAAG                         GTTTTTAGTGTTTTCAAATCGAACAATATCAATGTACAAATGATCTCACAA
genomic: TTATCTCTCTTATTAGTAACGTGAAGCAGTCATCAGCGGTTCTTGAAAAGgtattgcaaa ... acttgcgtagGTTTTTAGTGTTTTCAAATCGAACAATATCAATGTACAAATGATCTCACAA
EST: gi|37822683|gb|BJ580749.1|BJ580749
EST:     TTATCTCTCTTATTAGTAACGTGAAGCAGTCATCAGCGGTTCTTGAAAAG                         GTTTTTAGTGTTTTCAAATCGAACAATATCAATGTACAAATGATCTCACAA
genomic: TTATCTCTCTTATTAGTAACGTGAAGCAGTCATCAGCGGTTCTTGAAAAGgtattgcaaa ... acttgcgtagGTTTTTAGTGTTTTCAAATCGAACAATATCAATGTACAAATGATCTCACAA
EST: gi|162278814|gb|FC454657.1|FC454657
EST:     TTATCTCTCTTATTAGTAACGTGAAGCAGTCATCAGCGGTTCTTGAAAAG                         GTTTTTAGTGTTTTCAAATCGAACAATATCAATGTACAAATGATCTCACAA
genomic: TTATCTCTCTTATTAGTAACGTGAAGCAGTCATCAGCGGTTCTTGAAAAGgtattgcaaa ... acttgcgtagGTTTTTAGTGTTTTCAAATCGAACAATATCAATGTACAAATGATCTCACAA
EST: gi|37837044|gb|BJ595052.1|BJ595052
EST:     TTATCTCTCTTATTAGTAACGTGAAGCAGTCATCAGCGGTTCTTGAAAAG                         GTTTTTAGTGTTTTCAAATCGAACAATATCAATGTACAAATGATCTCACAA
genomic: TTATCTCTCTTATTAGTAACGTGAAGCAGTCATCAGCGGTTCTTGAAAAGgtattgcaaa ... acttgcgtagGTTTTTAGTGTTTTCAAATCGAACAATATCAATGTACAAATGATCTCACAA
EST: gi|37844453|gb|BJ602461.1|BJ602461
EST:     TTATCTCTCTTATTAGTAACGTGAAGCAGTCATCAGCGGTTCTTGAAAAG                         GTTTTTAGTGTTTTCAAATCGAACAATATCAATGTACAAATGATCTCACAA
genomic: TTATCTCTCTTATTAGTAACGTGAAGCAGTCATCAGCGGTTCTTGAAAAGgtattgcaaa ... acttgcgtagGTTTTTAGTGTTTTCAAATCGAACAATATCAATGTACAAATGATCTCACAA
EST: gi|162278813|gb|FC454656.1|FC454656
EST:     TTATCTCTCTTATTAGTAACGTGAAGCAGTCATCAGCGGTTCTTGAAAAG                         GTTTTTAGTGTTTTCAAATCGAACAATATCAATGTACAAATGATCTCACAA
genomic: TTATCTCTCTTATTAGTAACGTGAAGCAGTCATCAGCGGTTCTTGAAAAGgtattgcaaa ... acttgcgtagGTTTTTAGTGTTTTCAAATCGAACAATATCAATGTACAAATGATCTCACAA
EST: gi|37852463|gb|BJ610471.1|BJ610471
EST:     TTATCTCTCTTATTAGTAACGTGAAGCAGTCATCAGCGGTTCTTGAAAAG                         GTTTTTAGTGTTTTCAAATCGAACAATATCAATGTACAAATGATCTCACAA
genomic: TTATCTCTCTTATTAGTAACGTGAAGCAGTCATCAGCGGTTCTTGAAAAGgtattgcaaa ... acttgcgtagGTTTTTAGTGTTTTCAAATCGAACAATATCAATGTACAAATGATCTCACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actacaacagactctgaattgtgcatctaactacctatctgctcaacttgcgtagGTTTTTAGTGTTTTCAAATCGAACAATATCAATGTACAAATGATCTCACAAGGTGCCTCGAAG
                        atctaac  putative branch site (score: 2)