1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...acggatgtacctttttctattaagaagactcgctctcgctttctttccctcagtaaatattagtgtatgagtttcaactgtcgcatgaattgttttgcagCTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
species | Physcomitrella patens |
transcript | PP1S269_30V6.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAAAGTTGTGAGGGGAAGAGGTACCAG-TTTAGAACGGCGTTGGCAATG CTCNTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTGEST: gi|67696733|gb|BJ956966.1|BJ956966
genomic: CAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATGgtatccctcg ... tgttttgcagCTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
EST: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATG CTCTTGCCA-TTTGGACTCTTCTAGGAGCAGTTCTGTTCTGEST: gi|208376570|gb|DC922601.1|DC922601
genomic: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATGgtatccctcg ... tgttttgcagCTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
EST: ACAAAGNTGTGA-GGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATG CTCNTGCCATTTTGGACTCNTCTAGGAGCAGTTCTGTTCTGEST: gi|208381414|gb|DC927850.1|DC927850
genomic: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATGgtatccctcg ... tgttttgcagCTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
EST: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATG CTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTGEST: gi|208344725|gb|DC905174.1|DC905174
genomic: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATGgtatccctcg ... tgttttgcagCTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
EST: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATG CTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTGEST: gi|208394434|gb|DC928486.1|DC928486
genomic: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATGgtatccctcg ... tgttttgcagCTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
EST: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATG CTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTGEST: gi|208397506|gb|DC916390.1|DC916390
genomic: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATGgtatccctcg ... tgttttgcagCTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
EST: ACNAAGTTGTGAGGGGAAGAGGTACCAG-TTTAGAACGGCGTTGGCAATG CTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTGEST: gi|208347298|gb|DC925322.1|DC925322
genomic: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATGgtatccctcg ... tgttttgcagCTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
EST: ACAAAGTT-TGA-GGGAAGAGGTACCAG-TTTAGAACNGCGTTGGCAATG CTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTGEST: gi|208356794|gb|DC926805.1|DC926805
genomic: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATGgtatccctcg ... tgttttgcagCTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
EST: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATG CTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTGEST: gi|208363842|gb|DC943299.1|DC943299
genomic: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATGgtatccctcg ... tgttttgcagCTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
EST: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATG CTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTGEST: gi|208380224|gb|DC919060.1|DC919060
genomic: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATGgtatccctcg ... tgttttgcagCTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
EST: ACNAAGTTGTGAGGGGAAGAGGTACCAG-TTTAGAACGGCGTTGGCAATG CTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTGEST: gi|208355907|gb|DC926668.1|DC926668
genomic: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATGgtatccctcg ... tgttttgcagCTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
EST: ACAAAGNTGTGAGGGGAAGAGGTACCAG-TTTAGAACGGCGTTGGCAATG CTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTGEST: gi|100395052|gb|BY953582.1|BY953582
genomic: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATGgtatccctcg ... tgttttgcagCTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
EST: ACNAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATG CTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTGEST: gi|208354673|gb|DC918699.1|DC918699
genomic: ACAAAGTTGTGAGGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATGgtatccctcg ... tgttttgcagCTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
EST: GGGGAAGAGGTACCAGTTTTAGAACNGCGTNGGCAATG CTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
genomic: GGGGAAGAGGTACCAGTTTTAGAACGGCGTTGGCAATGgtatccctcg ... tgttttgcagCTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
tccctcagtaaatattagtgtatgagtttcaactgtcgcatgaattgttttgcagCTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
ttgtttt CT-rich tract
taaatattagtgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acggatgtacctttttctattaagaagactcgctctcgctttctttccctcagtaaatattagtgtatgagtttcaactgtcgcatgaattgttttgcagCTCTTGCCATTTTGGACTCTTCTAGGAGCAGTTCTGTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG