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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgagatagattgcaagtcgtacaatctacctcatttaattgatcaaagaagtcagtctatagttcttattcttacgttgtggaattttgtcatatcagGCTATGACAGAGATTTACAATTCTCATGGGGAACATCTTTCAGCTGCCAACACAATGCAGTTACTCGACACACTCCACACAGTAGCAGTTCATGCACATA

Basic information

species Physcomitrella patens
transcript PP1S264_74V6.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162259352|gb|FC435710.1|FC435710
EST:     TCATTCAAGATGTGAAGTGCCGAACAGCTGTGCAATTACTGCTTGTGCAG                         GCTATGACAGAGATTTACAATTCTCATGGGGAACATCTTTCAGCTGCCAAC
genomic: TCATTCAAGATGTGAAGTGCCGAACAGCTGTGCAATTACTGCTTGTGCAGgttcgtcccc ... gtcatatcagGCTATGACAGAGATTTACAATTCTCATGGGGAACATCTTTCAGCTGCCAAC
EST: gi|18354496|gb|BJ186552.1|BJ186552
EST:     TCATTCAAGATGTGAAGTGCCGAACAGCTGTGCAATTACTGCTTGTGCAG                         GCTATGACAGAGA
genomic: TCATTCAAGATGTGAAGTGCCGAACAGCTGTGCAATTACTGCTTGTGCAGgttcgtcccc ... gtcatatcagGCTATGACAGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaagaagtcagtctatagttcttattcttacgttgtggaattttgtcatatcagGCTATGACAGAGATTTACAATTCTCATGGGGAACATCTTTCAGCTGCCAACACAATGCAGTTACTCGACACACTCCACACAGTAGCAGTTCATGCACATA
                         ttcttac  putative branch site (score: 2)
                                         ttttgtc  putative PPT
                      ttattctta  TA-rich tract