1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacgcgtttacgaacgagccatggatgacgtagaagtatttcatattgcatggagcatgtaggtagcggcgcggatattgtgttgatcgtgcgacaaggtgacaaggattgtgattgtttgtgtgttttgtggtgcagATCAAATATCTGGTGTCGAGGTGGGGGACGGACCCAAACTCGAGGGGGTGCTACAGCTATGACGCAGTGGGCAAGCCCCACGATCTGTACGAACGGCTAC
species | Physcomitrella patens |
transcript | PP1S24_237V6.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACTTCGCTATCAGGCAGTTGAAAAGAATATTGCCGAATGCTGCAGAGCCG ATCAAATATCTGGTGTCGAGGTGGGGGACGGACCCAAACTCGAGGGGGTGCEST: gi|100383383|gb|BY950205.1|BY950205
genomic: ACTTCGCTATCAGGCAGTTGAAAAGAATATTGCCGAATGCTGCAGAGCCGgtacgcgttt ... tgtggtgcagATCAAATATCTGGTGTCGAGGTGGGGGACGGACCCAAACTCGAGGGGGTGC
EST: AAAGAATATTGCCGAATGCTGCAGAGCCG ATCAAATATCTGGTGTCGAGGTGGGGGACGGACCCAAACTCGAGGGGGTGCEST: gi|162225425|gb|FC401203.1|FC401203
genomic: AAAGAATATTGCCGAATGCTGCAGAGCCGgtacgcgttt ... tgtggtgcagATCAAATATCTGGTGTCGAGGTGGGGGACGGACCCAAACTCGAGGGGGTGC
EST: ACTTCGCTATCAGGCAGTTGAAAAGAATATTGCCGAATGCTGCAGAGCCG ATCAAATATCTGGTGTCGAGGTGGGGGACGGACCCAAACTCGAGGGGGTGCEST: gi|162222228|gb|FC397664.1|FC397664
genomic: ACTTCGCTATCAGGCAGTTGAAAAGAATATTGCCGAATGCTGCAGAGCCGgtacgcgttt ... tgtggtgcagATCAAATATCTGGTGTCGAGGTGGGGGACGGACCCAAACTCGAGGGGGTGC
EST: ACTTCGCTATCAGGCAGTTGAAAAGAATATTGCCGAATGCTGCAGAGCCG ATCAAATATCTGGTGTCGAGGTGGGGGACGGACCCAAACTCGAGGGGGTGCEST: gi|162165715|gb|FC340896.1|FC340896
genomic: ACTTCGCTATCAGGCAGTTGAAAAGAATATTGCCGAATGCTGCAGAGCCGgtacgcgttt ... tgtggtgcagATCAAATATCTGGTGTCGAGGTGGGGGACGGACCCAAACTCGAGGGGGTGC
EST: ACTTCGCTATCAGGCAGTTGAAAAGAATATTGCCGAATGCTGCAGAGCCG ATCAAATATCTGGTGTCGAGGTGGGGGACGGACCCAAACTCGAGGGGGTGC
genomic: ACTTCGCTATCAGGCAGTTGAAAAGAATATTGCCGAATGCTGCAGAGCCGgtacgcgttt ... tgtggtgcagATCAAATATCTGGTGTCGAGGTGGGGGACGGACCCAAACTCGAGGGGGTGC
tgatcgtgcgacaaggtgacaaggattgtgattgtttgtgtgttttgtggtgcagATCAAATATCTGGTGTCGAGGTGGGGGACGGACCCAAACTCGAGGGGGTGCTACAGCTATGACGCAGTGGGCAAGCCCCACGATCTGTACGAACGGCTAC
tgttgat putative branch site (score: 6)
attgttt TA-rich tract