Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtccggaactttattcgaaattggtttttttgctctatgtaatgtttatgcagtcactttttatataattgagtaatggaagtgctaatactcgtttttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTCTGGATGGACTTGTACTCTCTGCCAGTACCTGGAACTGATGGAAAGACGT

Basic information

species Physcomitrella patens
transcript PP1S227_66V6.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7207714|gb|AW561711.1|AW561711
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162224564|gb|FC400460.1|FC400460
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|208386457|gb|DC949130.1|DC949130
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162179912|gb|FC355983.1|FC355983
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162198076|gb|FC372103.1|FC372103
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162190641|gb|FC367527.1|FC367527
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162213332|gb|FC389620.1|FC389620
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162278617|gb|FC455015.1|FC455015
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162216861|gb|FC392211.1|FC392211
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|37839307|gb|BJ597315.1|BJ597315
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162262853|gb|FC439272.1|FC439272
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162243292|gb|FC415641.1|FC415641
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162243293|gb|FC415642.1|FC415642
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162275070|gb|FC450929.1|FC450929
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|208376475|gb|DC918920.1|DC918920
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162213331|gb|FC389619.1|FC389619
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162261368|gb|FC437801.1|FC437801
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162261369|gb|FC437802.1|FC437802
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|208365347|gb|DC950790.1|DC950790
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162272776|gb|FC447973.1|FC447973
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|67725705|gb|BJ975964.1|BJ975964
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162172981|gb|FC347891.1|FC347891
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162262854|gb|FC439273.1|FC439273
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162237332|gb|FC412440.1|FC412440
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162159195|gb|FC334366.1|FC334366
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|37847506|gb|BJ605514.1|BJ605514
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162267272|gb|FC442060.1|FC442060
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162163968|gb|FC339878.1|FC339878
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162222837|gb|FC399299.1|FC399299
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162267271|gb|FC442059.1|FC442059
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|22132681|gb|BQ827285.1|BQ827285
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|37841983|gb|BJ599991.1|BJ599991
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|37826305|gb|BJ584317.1|BJ584317
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162190640|gb|FC367526.1|FC367526
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|208382289|gb|DC919277.1|DC919277
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162258437|gb|FC434444.1|FC434444
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|67727259|gb|BJ977518.1|BJ977518
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162275069|gb|FC450928.1|FC450928
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162159194|gb|FC334365.1|FC334365
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162158368|gb|FC334163.1|FC334163
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|18335837|gb|BJ167858.1|BJ167858
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|19782687|gb|BQ039891.1|BQ039891
EST:     TGGAAAGA-TGGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: TGGAAAGACTG-AAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|37853540|gb|BJ611548.1|BJ611548
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162237331|gb|FC412439.1|FC412439
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
EST: gi|162199218|gb|FC375054.1|FC375054
EST:     GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCA                         GGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC
genomic: GTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 25 (downstream exon)
Score: 11

AGAGTGCAAGGATGTTAAGATTGACCGCGTTTACATTGGGTCATGCACTGGTGGAAAGACTGAAGATTTCCTTGCTGCTGCAGAGCTTCTGGCAATCTCAgtgagtccgg ... tttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTCTGGATGGACTTGTACTCTCTGCCAGTACCTGGAACTGATGGAAAGACGT




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcactttttatataattgagtaatggaagtgctaatactcgtttttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTCTGGATGGACTTGTACTCTCTGCCAGTACCTGGAACTGATGGAAAGACGT
                               tgctaat  putative branch site (score: 11)
                                       ctcgttttt  CT-rich tract
      tttttatataattgag  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtccggaactttattcgaaattggtttttttgctctatgtaatgtttatgcagtcactttttatataattgagtaatggaagtgctaatactcgtttttatgacagGGTCAAAAAGTGAAGGTGCCAACATTCCTTGTGCCTGCTACACAGAAGGTCTGGATGGACTTGTACTCTCTGCCAGTACCTGGAACTGATGGAAAGACGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA