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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgccgttttgcctcttatcaacgtggatgttagtatgtcatcaatttctgttttaatctgtagaatgaagtgtagtttgacaaaggaatccaaaaaccttattctcatcaatttttggctttcgaatgttcagGGAACGACAAAAATAAATATTGCAGTAGATCGCCTACCAATGTTTCGAGCTTGTTCTCGTACAGACAACACTGCTGGGCCCGAGCATTGTGGGACCATCC

Basic information

species Physcomitrella patens
transcript PP1S224_84V6.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37842025|gb|BJ600033.1|BJ600033
EST:     TTTTGGATGAGGAATTTTTAACTAGTGTCAAGTCCATTGACTACAAATCT                         GGAACGACAAAAATAAATATTGCAGTAGATCGCCTACCAATGTTTCGAGCT
genomic: TTTTGGATGAGGAATTTTTAACTAGTGTCAAGTCCATTGACTACAAATCTgtaagtgccg ... gaatgttcagGGAACGACAAAAATAAATATTGCAGTAGATCGCCTACCAATGTTTCGAGCT
EST: gi|37846467|gb|BJ604475.1|BJ604475
EST:     TTTTGGATGAGGAATTTTTAACTAGTGTCAAGTCCATNGACTACAAATCT                         GGAACGACAAAAATAAATATTGCAGTAGATCGCCTACCAATGTTTCGAGCT
genomic: TTTTGGATGAGGAATTTTTAACTAGTGTCAAGTCCATTGACTACAAATCTgtaagtgccg ... gaatgttcagGGAACGACAAAAATAAATATTGCAGTAGATCGCCTACCAATGTTTCGAGCT
EST: gi|208399938|gb|DC925206.1|DC925206
EST:     -TTTGGATGAGGAATTTTTAACTAGTGTCAAGTCCATTGACTACAAATCT                         GGAACGACAAAAATAAATATTGCAGTAGATCGCCTACCAATGTTTCGAGCT
genomic: TTTTGGATGAGGAATTTTTAACTAGTGTCAAGTCCATTGACTACAAATCTgtaagtgccg ... gaatgttcagGGAACGACAAAAATAAATATTGCAGTAGATCGCCTACCAATGTTTCGAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacaaaggaatccaaaaaccttattctcatcaatttttggctttcgaatgttcagGGAACGACAAAAATAAATATTGCAGTAGATCGCCTACCAATGTTTCGAGCTTGTTCTCGTACAGACAACACTGCTGGGCCCGAGCATTGTGGGACCATCC
 gtttgac  putative branch site (score: 4)
                            atcaattttt  TA-rich tract