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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtcatttgcttgtcacctcaactaagtcttttgagtgtcttgttcaattggcatatatcagtgcgtaagtcatgtgggttatactttctgtggttgttttctcggatgtgttgtcttgctttcttacaccgggttcctccattttttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG

Basic information

species Physcomitrella patens
transcript PP1S219_94V6.4
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208397534|gb|DC916404.1|DC916404
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162270288|gb|FC447300.1|FC447300
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37823739|gb|BJ581805.1|BJ581805
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162149641|gb|FC325834.1|FC325834
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162179399|gb|FC355399.1|FC355399
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162166750|gb|FC342719.1|FC342719
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162270289|gb|FC447301.1|FC447301
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37849666|gb|BJ607674.1|BJ607674
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162179007|gb|FC354315.1|FC354315
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162186427|gb|FC362983.1|FC362983
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162166751|gb|FC342720.1|FC342720
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162152577|gb|FC328855.1|FC328855
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162152576|gb|FC328854.1|FC328854
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162166261|gb|FC342854.1|FC342854
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162179008|gb|FC354316.1|FC354316
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|208375459|gb|DC945074.1|DC945074
EST:     CTCTTATTGAAACAAGAATGGACGAAGCCGAAGGNGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37840646|gb|BJ598654.1|BJ598654
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162192024|gb|FC367237.1|FC367237
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162166619|gb|FC343511.1|FC343511
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|208382503|gb|DC923173.1|DC923173
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162150766|gb|FC327038.1|FC327038
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162224661|gb|FC401909.1|FC401909
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37844930|gb|BJ602938.1|BJ602938
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162280382|gb|FC456087.1|FC456087
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTTACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37840523|gb|BJ598531.1|BJ598531
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCCCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37832459|gb|BJ590471.1|BJ590471
EST:     CTCTTATTGAAACAAGAATGGACGAAGCCGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162156545|gb|FC332153.1|FC332153
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162179121|gb|FC355586.1|FC355586
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37824580|gb|BJ582646.1|BJ582646
EST:     CTCTTATTGAAACAAGAATGGACGAAGCCGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|67726412|gb|BJ976671.1|BJ976671
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162179122|gb|FC355587.1|FC355587
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|208373778|gb|DC956294.1|DC956294
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|208396900|gb|DC915948.1|DC915948
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162188973|gb|FC364363.1|FC364363
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162224660|gb|FC401908.1|FC401908
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162177007|gb|FC353684.1|FC353684
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|208351166|gb|DC926030.1|DC926030
EST:     CAAGAATGGANGAAGCTGAAGGTGCTGACATTATCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162150767|gb|FC327039.1|FC327039
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|208349261|gb|DC918011.1|DC918011
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAAGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|18338206|gb|BJ170230.1|BJ170230
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|18340066|gb|BJ172094.1|BJ172094
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37837729|gb|BJ595737.1|BJ595737
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37828442|gb|BJ586454.1|BJ586454
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162270867|gb|FC446896.1|FC446896
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37844931|gb|BJ602939.1|BJ602939
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162190654|gb|FC367540.1|FC367540
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162149669|gb|FC326720.1|FC326720
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|208360647|gb|DC946413.1|DC946413
EST:     CTCTTATTGAAACAAGAATGGANGAAGCTGAAGGTGCTGACATTNTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162230608|gb|FC406031.1|FC406031
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162156546|gb|FC332154.1|FC332154
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162157381|gb|FC333483.1|FC333483
EST:     CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTTATTGAAACAAGAATGGACGAAGCTGAAGGTGCTGACATTCTCATGgtatgtgtca ... ttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcggatgtgttgtcttgctttcttacaccgggttcctccattttttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG
                    ttcttac  putative branch site (score: 2)
                                 ttcctccattttttat  putative PPT
                                        attttttatgtaca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtgtcatttgcttgtcacctcaactaagtcttttgagtgtcttgttcaattggcatatatcagtgcgtaagtcatgtgggttatactttctgtggttgttttctcggatgtgttgtcttgctttcttacaccgggttcctccattttttatgtacagGTTAAGCCAGCCATGCCCTACCTAGACGTCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT