Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaggtttggcgtacctcttttactagtttgaataaatcccgctaggattttctgatactatcttgctaatacatggcttcttttaagaacggtttaccttttcttcttttacagGTTGAAATGATGGAGGAAGTCTTTCTTAAAATCGTGACTTCCCTTGAAACTTCAAAAACTTTTCCTGGCAG

Basic information

species Physcomitrella patens
transcript PP1S201_47V6.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162181627|gb|FC357929.1|FC357929
EST:     TGCCGTCACTTTTTTCGGACCTTCGCTCATTGTATAGTCATCCTAGAAAG                         GTTGAAATGATGGAGGAAGTCTTTCTTAAAATCGTGACTTCCCTTGAAACT
genomic: TGCCGTCACTTTTTTCGGACCTTCGCTCATTGTATAGTCATCCTAGAAAGgtacaggttt ... tcttttacagGTTGAAATGATGGAGGAAGTCTTTCTTAAAATCGTGACTTCCCTTGAAACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttgctaatacatggcttcttttaagaacggtttaccttttcttcttttacagGTTGAAATGATGGAGGAAGTCTTTCTTAAAATCGTGACTTCCCTTGAAACTTCAAAAACTTTTCCTGGCAG
    tgctaat  putative branch site (score: 2)
                                 tttaccttttcttctt  putative PPT
                  ttcttttaa  TA-rich tract