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gttagtcagagagttggtaatgaggaatcttaaaaaagaagctgctcaatagaagatcaaattttttaaatgttttgtcgtagattccttccctgctctctggtaaacttcatgaggataatcattcatgaggtggtgacactcatgaatgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAGAAGTATAGATTTAGGTTTCCACGCTGGACTAGCCAGCATATCATCTTT
species | Physcomitrella patens |
transcript | PP1S201_115V6.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATAGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAEST: gi|208385376|gb|DC956616.1|DC956616
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
EST: CAATGGTGGTCGCACTACGGATGCACTTTTGGAATTCGTAAACAATGAAGCGGEST: gi|37847154|gb|BJ605162.1|BJ605162
genomic: CAATGGTGGTCGCACTACGGATGCACTTTTGGAATTCGTAAACAATGAAGCGGgtgagttaca ... ttccctgc
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAEST: gi|37835612|gb|BJ593624.1|BJ593624
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAEST: gi|22132035|gb|BQ826945.1|BQ826945
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAAAGA-G GACTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCEST: gi|37833789|gb|BJ591801.1|BJ591801
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagG-CTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTC
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAEST: gi|208393949|gb|DC928729.1|DC928729
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAEST: gi|37821752|gb|BJ579818.1|BJ579818
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAEST: gi|37825580|gb|BJ583646.1|BJ583646
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAEST: gi|208397894|gb|DC916649.1|DC916649
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAEST: gi|208385667|gb|DC952828.1|DC952828
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAEST: gi|208380848|gb|DC923330.1|DC923330
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAEST: gi|208356156|gb|DC957316.1|DC957316
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
EST: CAATGGTGGTCGCACTACGGATGCACTTTTGGAATTCGTAAACAATGAAGCGGEST: gi|67692042|gb|BJ952275.1|BJ952275
genomic: CAATGGTGGTCGCACTACGGATGCACTTTTGGAATTCGTAAACAATGAAGCGGgtgagttaca ... ttccctgc
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAEST: gi|37853039|gb|BJ611047.1|BJ611047
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAEST: gi|208393538|gb|DC949700.1|DC949700
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAEST: gi|37845884|gb|BJ603892.1|BJ603892
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAEST: gi|67725662|gb|BJ975921.1|BJ975921
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAEST: gi|208381758|gb|DC928421.1|DC928421
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
EST: CAATGGTGGTCGCACTACGGATGCACTTTTGGAATTCGTAAACAATGAAGCGGEST: gi|37840656|gb|BJ598664.1|BJ598664
genomic: CAATGGTGGTCGCACTACGGATGCACTTTTGGAATTCGTAAACAATGAAGCGGgtgagttaca ... ttccctgc
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAEST: gi|208354258|gb|DC957450.1|DC957450
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
EST: CAATGGTGGTCGCACTACGGATGCACTTTTGGAATTCGTAAACAATGAAGCGGEST: gi|67722506|gb|BJ972765.1|BJ972765
genomic: CAATGGTGGTCGCACTACGGATGCACTTTTGGAATTCGTAAACAATGAAGCGGgtgagttaca ... ttccctgc
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAEST: gi|208348693|gb|DC926368.1|DC926368
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
EST: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAG GCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
genomic: TTTATAGTAAAGAAGAACATATTGTCAACTATTGCTGAGAAACAATGAAGgttagtcaga ... tgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCA
aaacttcatgaggataatcattcatgaggtggtgacactcatgaatgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAGAAGTATAGATTTAGGTTTCCACGCTGGACTAGCCAGCATATCATCTTT
ataatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtcagagagttggtaatgaggaatcttaaaaaagaagctgctcaatagaagatcaaattttttaaatgttttgtcgtagattccttccctgctctctggtaaacttcatgaggataatcattcatgaggtggtgacactcatgaatgttttgcagGCTTGATCTGTCTGCCCCGCTGCACTTATTGGTGGTGATGAGGCTATCTCAGAAGTATAGATTTAGGTTTCCACGCTGGACTAGCCAGCATATCATCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA