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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataattggcgctttgttagaacgtcaaagcagtgcatacgtctaggaaatgtagaaagttgatttgtttttgcaagacttgcatattgcattttgggcaaggtttatgcacttctgtttcattgatacctcgtgcatctcttgcttgtgtagTTTGCGGATGGAAGCCTACGTGGTCCAATTCAGTACTAAGGTTCCAAATGTACGAACTCCATCCACAGGCATCCAAATTGTAACTTAGAGTCGCTTCTTG

Basic information

species Physcomitrella patens
transcript PP1S18_59V6.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67701453|gb|BJ961686.1|BJ961686
EST:     AAGGTCCAACTGCAGAATTTGACACATCTGACAATGCTATAGTGCGACAG                         TTTGCGGATGGAAGCCTACGTGGTCCAATTCAGTACTAAGGTTCCAAATGT
genomic: AAGGTCCAACTGCAGAATTTGACACATCTGACAATGCTATAGTGCGACAGgtaataattg ... gcttgtgtagTTTGCGGATGGAAGCCTACGTGGTCCAATTCAGTACTAAGGTTCCAAATGT
EST: gi|208386967|gb|DC956936.1|DC956936
EST:     AAGGTCCAACTGCAGAATTTGACACATCTGACAATGCTATAGTGCGACAG                         TTTGCGGATGGAAGCCTACGTGGTCCAATTCAGTACTAAGGTTCCAAATGT
genomic: AAGGTCCAACTGCAGAATTTGACACATCTGACAATGCTATAGTGCGACAGgtaataattg ... gcttgtgtagTTTGCGGATGGAAGCCTACGTGGTCCAATTCAGTACTAAGGTTCCAAATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaggtttatgcacttctgtttcattgatacctcgtgcatctcttgcttgtgtagTTTGCGGATGGAAGCCTACGTGGTCCAATTCAGTACTAAGGTTCCAAATGTACGAACTCCATCCACAGGCATCCAAATTGTAACTTAGAGTCGCTTCTTG
                      cattgat  putative branch site (score: 4)
 tctcttgctt  putative PPT
 tttcatt  TA-rich tract