1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaataattggcgctttgttagaacgtcaaagcagtgcatacgtctaggaaatgtagaaagttgatttgtttttgcaagacttgcatattgcattttgggcaaggtttatgcacttctgtttcattgatacctcgtgcatctcttgcttgtgtagTTTGCGGATGGAAGCCTACGTGGTCCAATTCAGTACTAAGGTTCCAAATGTACGAACTCCATCCACAGGCATCCAAATTGTAACTTAGAGTCGCTTCTTG
species | Physcomitrella patens |
transcript | PP1S18_59V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAGGTCCAACTGCAGAATTTGACACATCTGACAATGCTATAGTGCGACAG TTTGCGGATGGAAGCCTACGTGGTCCAATTCAGTACTAAGGTTCCAAATGTEST: gi|208386967|gb|DC956936.1|DC956936
genomic: AAGGTCCAACTGCAGAATTTGACACATCTGACAATGCTATAGTGCGACAGgtaataattg ... gcttgtgtagTTTGCGGATGGAAGCCTACGTGGTCCAATTCAGTACTAAGGTTCCAAATGT
EST: AAGGTCCAACTGCAGAATTTGACACATCTGACAATGCTATAGTGCGACAG TTTGCGGATGGAAGCCTACGTGGTCCAATTCAGTACTAAGGTTCCAAATGT
genomic: AAGGTCCAACTGCAGAATTTGACACATCTGACAATGCTATAGTGCGACAGgtaataattg ... gcttgtgtagTTTGCGGATGGAAGCCTACGTGGTCCAATTCAGTACTAAGGTTCCAAATGT
caaggtttatgcacttctgtttcattgatacctcgtgcatctcttgcttgtgtagTTTGCGGATGGAAGCCTACGTGGTCCAATTCAGTACTAAGGTTCCAAATGTACGAACTCCATCCACAGGCATCCAAATTGTAACTTAGAGTCGCTTCTTG
cattgat putative branch site (score: 4)
tctcttgctt putative PPT
tttcatt TA-rich tract