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gtgcttttctcatcttcgcgtgtttaactcatacgtacgcttcaatgaaaagcgaccaaggtgctatagctcctgttacggctttatctgttgttgctcggtgatgaactatgtttttctcacttgtggtcacttcgaataaaacagGGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG
species | Physcomitrella patens |
transcript | PP1S189_118V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAT GGGAGTTCACCATGTTGGAGCTTGCTGGCTTACTCAAGGAGEST: gi|208390897|gb|DC945914.1|DC945914
genomic: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAGgtgcttttct ... aataaaacagGGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG
EST: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAG GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGEST: gi|37850860|gb|BJ608868.1|BJ608868
genomic: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAGgtgcttttct ... aataaaacagGGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG
EST: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAG GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGEST: gi|67692844|gb|BJ953077.1|BJ953077
genomic: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAGgtgcttttct ... aataaaacagGGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG
EST: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAG GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGEST: gi|67697660|gb|BJ957893.1|BJ957893
genomic: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAGgtgcttttct ... aataaaacagGGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG
EST: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAG GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGEST: gi|208385608|gb|DC948967.1|DC948967
genomic: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAGgtgcttttct ... aataaaacagGGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG
EST: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAG GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGEST: gi|37843082|gb|BJ601090.1|BJ601090
genomic: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAGgtgcttttct ... aataaaacagGGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG
EST: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAG GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGEST: gi|208385977|gb|DC956493.1|DC956493
genomic: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAGgtgcttttct ... aataaaacagGGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG
EST: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAG GGGAGTTCACCATGTTGGAGCNTGCTGGCTTAGTCAAGGAGEST: gi|208370456|gb|DC952159.1|DC952159
genomic: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAGgtgcttttct ... aataaaacagGGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG
EST: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAG GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGEST: gi|37830721|gb|BJ588733.1|BJ588733
genomic: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAGgtgcttttct ... aataaaacagGGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG
EST: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAG GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGEST: gi|208371231|gb|DC956009.1|DC956009
genomic: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAGgtgcttttct ... aataaaacagGGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG
EST: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAG GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG
genomic: CCGGCTTATGAATGGAGACCATACTGGGCCTATCAATATCGGCAACCCAGgtgcttttct ... aataaaacagGGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG
gttgctcggtgatgaactatgtttttctcacttgtggtcacttcgaataaaacagGGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG
ttctcac putative branch site (score: 9)
tatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttttctcatcttcgcgtgtttaactcatacgtacgcttcaatgaaaagcgaccaaggtgctatagctcctgttacggctttatctgttgttgctcggtgatgaactatgtttttctcacttgtggtcacttcgaataaaacagGGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG