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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgctggattgcgtttgtgcattttttcttttgtcattcggtaatgaatctgcatgaactgtttaggattttgacatcatcctaacttgaggagatgtggtctgcatttgtttattcttgactatcgagagtttggtggtgttgtgcagTCTAGGTCAAAGGCTCTTGCAGATCTTCAACTAATGCAGTCTGTGAAGGTTGACAAGTTGAGTGACATACAATGTCAACCTGTCTCGCAACTGAAATTTG

Basic information

species Physcomitrella patens
transcript PP1S178_72V6.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22132083|gb|BQ826972.1|BQ826972
EST:     CTCTTGAACGCTACACACATTACTATGAACGTTGGGCTACAAATGAGTCT                         TCTAGGTCAAAGGCTCTTGCAGATCTTCAACTAATGCAGTCTGTGAAGGTT
genomic: CTCTTGAACGCTACACACATTACTATGAACGTTGGGCTACAAATGAGTCTgtaagtgctg ... tgttgtgcagTCTAGGTCAAAGGCTCTTGCAGATCTTCAACTAATGCAGTCTGTGAAGGTT
EST: gi|162233180|gb|FC409003.1|FC409003
EST:     CTCTTGAACGCTACACACATTACTATGAACGTTGGGCTACAAATGAGTCT                         TCTAGGTCAAAGGCTCTTGCAGATCTTCAACTAATGCAGTCTGTGAAGGTT
genomic: CTCTTGAACGCTACACACATTACTATGAACGTTGGGCTACAAATGAGTCTgtaagtgctg ... tgttgtgcagTCTAGGTCAAAGGCTCTTGCAGATCTTCAACTAATGCAGTCTGTGAAGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtggtctgcatttgtttattcttgactatcgagagtttggtggtgttgtgcagTCTAGGTCAAAGGCTCTTGCAGATCTTCAACTAATGCAGTCTGTGAAGGTTGACAAGTTGAGTGACATACAATGTCAACCTGTCTCGCAACTGAAATTTG
                     tcttgac  putative branch site (score: 3)
           atttgtttattctt  TA-rich tract