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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttaagtttatgtggagggtatgtttgtaagtttttcccaatttcggtagtaatctcaacaaatttataattaacccactgattattgtgtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGTTGCAGTGGAGCTCGTATTCTCGTCACACTGCTCGGGGTTCTGAAGGAGA

Basic information

species Physcomitrella patens
transcript PP1S160_44V6.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208362030|gb|DC950479.1|DC950479
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|67728109|gb|BJ978368.1|BJ978368
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|162231216|gb|FC407003.1|FC407003
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|37824997|gb|BJ583063.1|BJ583063
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|18333054|gb|BJ165068.1|BJ165068
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208372747|gb|DC952634.1|DC952634
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|67724453|gb|BJ974712.1|BJ974712
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208364951|gb|DC947093.1|DC947093
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|22132646|gb|BQ827270.1|BQ827270
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208388349|gb|DC949321.1|DC949321
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208368091|gb|DC947651.1|DC947651
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|162258772|gb|FC434571.1|FC434571
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|22492620|gb|BU052543.1|BU052543
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|15320244|gb|BI488011.1|BI488011
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|18335246|gb|BJ167264.1|BJ167264
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|67727140|gb|BJ977399.1|BJ977399
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|37828592|gb|BJ586604.1|BJ586604
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|162177571|gb|FC352429.1|FC352429
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208357273|gb|DC949903.1|DC949903
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGGCATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208367940|gb|DC955375.1|DC955375
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|162173639|gb|FC349607.1|FC349607
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|40781593|gb|AJ583523.1|AJ583523
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208362110|gb|DC943523.1|DC943523
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208353436|gb|DC922490.1|DC922490
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|162156305|gb|FC332329.1|FC332329
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTTTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208389390|gb|DC953228.1|DC953228
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208385682|gb|DC952843.1|DC952843
EST:     GTGATCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|162166658|gb|FC343550.1|FC343550
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|37838686|gb|BJ596694.1|BJ596694
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208375552|gb|DC945111.1|DC945111
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|37837476|gb|BJ595484.1|BJ595484
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|162177570|gb|FC352428.1|FC352428
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggtagtaatctcaacaaatttataattaacccactgattattgtgtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGTTGCAGTGGAGCTCGTATTCTCGTCACACTGCTCGGGGTTCTGAAGGAGA
      taatctcaacaaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcttaagtttatgtggagggtatgtttgtaagtttttcccaatttcggtagtaatctcaacaaatttataattaacccactgattattgtgtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGTTGCAGTGGAGCTCGTATTCTCGTCACACTGCTCGGGGTTCTGAAGGAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA