1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gatgtataaccacaactaaaatcatcggtgctgtgaatttcttctgcattataaagaactttttacaccctgtctgctaattttgcaattggttttgcagGAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAGCCTCGTCATCAAACGGAGAAGAAGGCTCCTACAAGTAAAGAAAAGAAGG
species | Physcomitrella patens |
transcript | PP1S15_298V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTAT GAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAGEST: gi|162177638|gb|FC353224.1|FC353224
genomic: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTATgtaagttcta ... ggttttgcagGAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAG
EST: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTAT GAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAGEST: gi|162151227|gb|FC327187.1|FC327187
genomic: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTATgtaagttcta ... ggttttgcagGAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAG
EST: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTAT GAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAGEST: gi|162150207|gb|FC326292.1|FC326292
genomic: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTATgtaagttcta ... ggttttgcagGAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAG
EST: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTAT GAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAGEST: gi|18363604|gb|BJ195676.1|BJ195676
genomic: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTATgtaagttcta ... ggttttgcagGAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAG
EST: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTANAGCTTTAT GAACCANGTGAAAGGCCATTTGACTTGGCEST: gi|161984098|gb|EE296401.1|EE296401
genomic: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTATgtaagttcta ... ggttttgcagGAACCAAGTGAAAGGCCATTTGACTTGGC
EST: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTAT GAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAGEST: gi|162270704|gb|FC446317.1|FC446317
genomic: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTATgtaagttcta ... ggttttgcagGAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAG
EST: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTAT GAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAG
genomic: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTATgtaagttcta ... ggttttgcagGAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAG
gcattataaagaactttttacaccctgtctgctaattttgcaattggttttgcagGAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAGCCTCGTCATCAAACGGAGAAGAAGGCTCCTACAAGTAAAGAAAAGAAGG
tgctaat putative branch site (score: 2)
ataaagaacttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgtataaccacaactaaaatcatcggtgctgtgaatttcttctgcattataaagaactttttacaccctgtctgctaattttgcaattggttttgcagGAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAGCCTCGTCATCAAACGGAGAAGAAGGCTCCTACAAGTAAAGAAAAGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG