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gtaagtttttggcttaaacggaaacgaactatgaatgcatgcaatcacttgctgctcgcacatgggttaacacagagtatctccttgtattactgttttattgcttgtcgactgggatcgatttttgatttgagaaatacaattggttgaccagACTGCGAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAATCCTCAATGGGTGGATGGTGAACTTGTCTTTCTAAATGGCAAG
species | Physcomitrella patens |
transcript | PP1S144_87V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAGGAAGTCGATTGCCGCACAGGGGGGTCTATCCAGAGGAGCTTGGTGTG ACTGCGAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAATEST: gi|162226002|gb|FC401306.1|FC401306
genomic: AAGGAAGTCGATTGCCGCACAGGGGGGTCTATCCAGAGGAGCTTGGTGTGgtaagttttt ... ggttgaccagACTGCGAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAAT
EST: AAGGAAGTCGATTGCCGCACAGGGGGGTCTATCCAGAGGAGCTTGGTGTG ACTGCGAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAATEST: gi|162180514|gb|FC356156.1|FC356156
genomic: AAGGAAGTCGATTGCCGCACAGGGGGGTCTATCCAGAGGAGCTTGGTGTGgtaagttttt ... ggttgaccagACTGCGAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAAT
EST: AAGGAAGTCGATTGCCGCACAGGGGGGTCTATCCAGAGGAGCTTGGTGTG ACTGCGAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAAT
genomic: AAGGAAGTCGATTGCCGCACAGGGGGGTCTATCCAGAGGAGCTTGGTGTGgtaagttttt ... ggttgaccagACTGCGAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAAT
attgcttgtcgactgggatcgatttttgatttgagaaatacaattggttgaccagACTGCGAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAATCCTCAATGGGTGGATGGTGAACTTGTCTTTCTAAATGGCAAG
ttttgat putative branch site (score: 4)
atttttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttttggcttaaacggaaacgaactatgaatgcatgcaatcacttgctgctcgcacatgggttaacacagagtatctccttgtattactgttttattgcttgtcgactgggatcgatttttgatttgagaaatacaattggttgaccagACTGCGAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAATCCTCAATGGGTGGATGGTGAACTTGTCTTTCTAAATGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA