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gtaattatcgttgtatattttgtatttcaggttatatttgaacggattcgcatagatcctagatgatggttttaaaagggaaaaaaagaataaggttggatccatatctgcacatttatcaggtttatggaccttatttgattgtgtgaccacaacattcatcttcagGATCATTTCCAGGCAGAGTTTAGGGAAACGCTTAACCTGAAGTACATAG
species | Physcomitrella patens |
transcript | PP1S131_40V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAAACAAGTTGCTCCTTGATGTTGGTCTTTGGCTTTGCACCATCTTGAAG GATCATTTCCAGGCAGAGTTTAGGGAAACGCTTAACCTGAAGTACATAGEST: gi|162277927|gb|FC454058.1|FC454058
genomic: GAAACAAGTTGCTCCTTGATGTTGGTCTTTGGCTTTGCACCATCTTGAAGgtaattatcg ... tcatcttcagGATCATTTCCAGGCAGAGTTTAGGGAAACGCTTAACCTGAAGTACATAG
EST: GAAACAAGTTGCTCCTTGATGTTGGTCTTTGGCTTTGCACCATCTTGAAG GATCATTTCCAGGCAGAGTTTAGGGAAACGCTTAACCTGAAGTACATAG
genomic: GAAACAAGTTGCTCCTTGATGTTGGTCTTTGGCTTTGCACCATCTTGAAGgtaattatcg ... tcatcttcagGATCATTTCCAGGCAGAGTTTAGGGAAACGCTTAACCTGAAGTACATAG
atttatcaggtttatggaccttatttgattgtgtgaccacaacattcatcttcagGATCATTTCCAGGCAGAGTTTAGGGAAACGCTTAACCTGAAGTACATAG
atttgat putative branch site (score: 8)
ttcatcttc putative PPT
ttatttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattatcgttgtatattttgtatttcaggttatatttgaacggattcgcatagatcctagatgatggttttaaaagggaaaaaaagaataaggttggatccatatctgcacatttatcaggtttatggaccttatttgattgtgtgaccacaacattcatcttcagGATCATTTCCAGGCAGAGTTTAGGGAAACGCTTAACCTGAAGTACATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG