1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ctttgaataggtctaaatgtgagaaatcacttgagacctatatcgcttacaaatcgccagctggttgcaattgttgattgagacgaaatttttgcatcagGTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAAGGGGGGGAGACATTCTGGAGAATGTATCATCTGTTGATACTATTGTGTTTGACAAGACCG
species | Physcomitrella patens |
transcript | PP1S121_53V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTG GTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAANNNNNNNAGACEST: gi|100417161|gb|BY957198.1|BY957198
genomic: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTGgtatgcaact ... tttgcatcagGTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAAGGGGGGGAGAC
EST: CATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTG GTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAANNNNNNNAGACEST: gi|162168676|gb|FC343938.1|FC343938
genomic: CATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTGgtatgcaact ... tttgcatcagGTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAAGGGGGGGAGAC
EST: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTG GTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAANNNNNNNAGACEST: gi|162256487|gb|FC432518.1|FC432518
genomic: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTGgtatgcaact ... tttgcatcagGTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAAGGGGGGGAGAC
EST: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTG GTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCAEST: gi|162177316|gb|FC353473.1|FC353473
genomic: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTGgtatgcaact ... tttgcatcagGTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCA
EST: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTG GTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAANNNNNNNAGACEST: gi|162178440|gb|FC354164.1|FC354164
genomic: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTGgtatgcaact ... tttgcatcagGTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAAGGGGGGGAGAC
EST: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTG GTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAANNNNNNNAGACEST: gi|162196153|gb|FC373494.1|FC373494
genomic: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTGgtatgcaact ... tttgcatcagGTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAAGGGGGGGAGAC
EST: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTG GTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAANNNNNNNAGACEST: gi|162154985|gb|FC331403.1|FC331403
genomic: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTGgtatgcaact ... tttgcatcagGTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAAGGGGGGGAGAC
EST: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTG GTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAANNNNNNNAGACEST: gi|162164775|gb|FC341316.1|FC341316
genomic: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTGgtatgcaact ... tttgcatcagGTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAAGGGGGGGAGAC
EST: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTG GTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAANNNNNNNAGACEST: gi|162214364|gb|FC390083.1|FC390083
genomic: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTGgtatgcaact ... tttgcatcagGTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAAGGGGGGGAGAC
EST: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTG GTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAANNNNNNNAGACEST: gi|162179692|gb|FC355750.1|FC355750
genomic: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTGgtatgcaact ... tttgcatcagGTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAAGGGGGGGAGAC
EST: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTG GTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAANNNNNNNAGAC
genomic: TCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTGgtatgcaact ... tttgcatcagGTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAAGGGGGGGAGAC
cttacaaatcgccagctggttgcaattgttgattgagacgaaatttttgcatcagGTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAAGGGGGGGAGACATTCTGGAGAATGTATCATCTGTTGATACTATTGTGTTTGACAAGACCG
tttttgc CT-rich tract
aaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgaataggtctaaatgtgagaaatcacttgagacctatatcgcttacaaatcgccagctggttgcaattgttgattgagacgaaatttttgcatcagGTTGGTACATCCCTTGGGGCGAGGAGGGGTCTTCTCATAAGGGGGGGAGACATTCTGGAGAATGTATCATCTGTTGATACTATTGTGTTTGACAAGACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA