1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aataattggtccctctttttcccgttctcctcctccctccttattgggtcttgtcgaatcgtcaaattagcctgatcttgtccttgcgatatacttgcagGTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCTGATGTGGATGTTCGGTTTTTCGCTGGGCAGGCCCTACAAGCCTGTGACC
species | Physcomitrella patens |
transcript | PP1S117_137V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACA GTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCTEST: gi|208369319|gb|DC955864.1|DC955864
genomic: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACAgtaagtccac ... atacttgcagGTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCT
EST: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACA GTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCTEST: gi|37847718|gb|BJ605726.1|BJ605726
genomic: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACAgtaagtccac ... atacttgcagGTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCT
EST: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACA GTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCTEST: gi|37821945|gb|BJ580011.1|BJ580011
genomic: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACAgtaagtccac ... atacttgcagGTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCT
EST: AACGTCGCCAAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACA GTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCTEST: gi|162248181|gb|FC422513.1|FC422513
genomic: AACGTCGCC-AAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACAgtaagtccac ... atacttgcagGTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCT
EST: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACA GTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCTEST: gi|18337201|gb|BJ169225.1|BJ169225
genomic: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACAgtaagtccac ... atacttgcagGTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCT
EST: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACA GTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCTEST: gi|37828121|gb|BJ586133.1|BJ586133
genomic: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACAgtaagtccac ... atacttgcagGTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCT
EST: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACA GTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCTEST: gi|67726258|gb|BJ976517.1|BJ976517
genomic: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACAgtaagtccac ... atacttgcagGTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCT
EST: TTAATGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAGTCCACA GTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCTEST: gi|162199120|gb|FC374590.1|FC374590
genomic: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACAgtaagtccac ... atacttgcagGTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCT
EST: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACA GTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCTEST: gi|37826062|gb|BJ584074.1|BJ584074
genomic: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACAgtaagtccac ... atacttgcagGTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCT
EST: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACA GTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCTEST: gi|162198994|gb|FC374542.1|FC374542
genomic: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACAgtaagtccac ... atacttgcagGTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCT
EST: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACA GTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCTEST: gi|162248182|gb|FC422514.1|FC422514
genomic: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACAgtaagtccac ... atacttgcagGTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCT
EST: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACA GTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCT
genomic: TTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACAgtaagtccac ... atacttgcagGTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCT
gggtcttgtcgaatcgtcaaattagcctgatcttgtccttgcgatatacttgcagGTTGTGGAGCAAACAATTCGGCCATGCTTGTTGGAACTTCAGGAAGACCCTGATGTGGATGTTCGGTTTTTCGCTGGGCAGGCCCTACAAGCCTGTGACC
gcctgat putative branch site (score: 9)
tcaaatta TA-rich tract