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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcaacaaaacatgtcgatggaaataggaattccaagaaatctagagtaggcatttttcgatcgaatacaaacgacatacactgtgaatcttttcaaagatcgaggcagagatcaaagcagagtctaaggaccagcatgttcaaaaattctgaacacattatttacataccagcttttgtgtagGGTGGCAAGGTATCAAGAAGCGAACCCTGGATGCTTCACGATCGTTACATTCCCATTCCTCTTTGCGGTTATGTTTGGCGACTGGGGACATGGCATAGCA

Basic information

species Physcomitrella patens
transcript PP1S115_183V6.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S115_183V6.1 (Physcomitrella patens), 3'ss of exon 11
lower sequence: GLYMA11G15730.1 (Glycine max), 3'ss of exon 10
gtaagtttcaacaaaacatgtcgatggaaataggaattccaagaaatctagagtaggcatttttcgatcgaatacaaacgacatacactgtgaatcttttcaaagatcgaggcagagatcaaagcagagtctaaggaccagcatgttcaaaaattctgaacacattatttacataccagcttttgt-----gtagGGTGGCAAGGTATCAAGAAGCGAACCCTGGATGCTTCACGATCGTTACATTCCCATTCCTCTTTGCGGTTATGTTTGGCGACTGGGGACATGGCATA-GCA
                                                                                             |   ||  | |   | ||     |||  || ||   | |    |      | |  ||||| |   || ||      | |  |  |||  ||||     | || || ||||| ||||||||||| || |||| |   |  || |   ||| ||||||||| || |||||||||||||||||||||||||| ||||| ||  || 
---------------------------------------------------------------------------------------------agagttgaataatgccagtttaggatggaaccattattttgcaattttgctat--aaaaactgaaaagactcctagtcctaatgagcccttgtacttggcagTGTTGCAAGATATCAAGAAGCAAATCCTGCAGTTTATACAACTATTATATTCCCATTTCTTTTTGCGGTTATGTTTGGCGACTGGGGTCATGGAATTTGC-

upper sequence: PP1S115_183V6.1 (Physcomitrella patens), 3'ss of exon 11
lower sequence: AT2G21410.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaagtttcaacaaaacatgtcgatggaaataggaattccaagaaatctagagtaggcatttttcgatcgaatacaaacgacatacactgtgaatcttttcaaagatcgaggcagagatcaaagcagagtctaaggaccagcatgttcaaaaattctgaacacattatttacataccagcttttgtgtagGGTGGCAAGGTATCAAGAAGCGAACCCTGGATGCTTCACGATCGTTACATTCCCATTCCTCTTTGCGGTTATGTTTGGCGACTGGGGACATGGCATA-GCA
                                                                              | || |    ||   |  || |      |   |    | ||| |      || | ||     |  | ||    ||||      |  || |||    || |  ||    | || ||||| |  ||||| || || || ||| |    ||||| || ||||| ||||| ||||| ||||| ||||||||||| |||||||| ||||| ||  || 
------------------------------------------------------------------------------caacctttcttgcttactttattttttcttctgc--aatatccattt---gtgttagtgttcgtctctt---gaatttcatggatcttctttgatcactacatt----gcagTGTGGCCAAATATCAGGAGGCCAATCCTAGTGTATTCACAATTGTTACCTTCCCCTTCCTGTTTGCTGTTATGTTTGGTGACTGGGGTCATGGAATCTGC-

upper sequence: PP1S115_183V6.1 (Physcomitrella patens), 3'ss of exon 11
lower sequence: EFJ10256 (Selaginella moellendorffii), 3'ss of exon 9
gtaagtttcaacaaaacatgtcgatggaaataggaattccaagaaatctagagtaggcatttttcgatcgaatacaaacgacatacactgtgaatcttttcaaagatcgaggcagagatcaaagcagagtctaaggaccagcatgttcaaaaattctgaacacattatttacataccagcttt-tgtgtagGGTGGCAAGGTATCAAGAAGCGAACCCTGGATGCTTCACGATCGTTACATTCCCATTCCTCTTTGCGGTTATGTTTGGCGACTGGGGACATGGCATAGCA
                                                                                                                                            | | | |    ||   | |     | | |   ||      ||  | |  || || | ||| ||||||||||| ||||| |||   ||||| ||||| ||||| ||||| || || ||||| |||||||| |||||||| || || || |  
--------------------------------------------------------------------------------------------------------------------------------------------gtaagcttgtgaaccattattggctgagtcttatggtcttttggtctccagTGTTGGAAGATATCAAGAAGCAAACCCGGGAGTTTTCACCATCGTGACATTTCCATTTCTATTCGCGGTCATGTTTGGAGACTGGGGTCACGGAATTGTC

upper sequence: PP1S115_183V6.1 (Physcomitrella patens), 3'ss of exon 11
lower sequence: EFJ12515 (Selaginella moellendorffii), 3'ss of exon 9
gtaagtttcaacaaaacatgtcgatggaaataggaattccaagaaatctagagtaggcatttttcgatcgaatacaaacgacatacactgtgaatcttttcaaagatcgaggcagagatcaaagcagagtctaaggaccagcatgttcaaaaattctgaacacattatttacataccagcttttg---tgtagGGTGGCAAGGTATCAAGAAGCGAACCCTGGATGCTTCACGATCGTTACATTCCCATTCCTCTTTGCGGTTATGTTTGGCGACTGGGGACATGGCATAGCA
                                                                                                                                           |  ||  | ||  ||| |   |  |  |    | ||    ||||||   |  || || | ||| ||||||||||| ||||| |||   ||||| ||||| ||||| ||||| || || ||||| |||||||| |||||||| || || || |  
-----------------------------------------------------------------------------------------------------------------------------------------gtaagattgtgaaccattattggctgacaaaagtcttatggtcttttggcctccagTGTTGGAAGATATCAAGAAGCAAACCCGGGAGTTTTCACCATCGTGACATTTCCATTTCTATTCGCGGTCATGTTTGGGGACTGGGGTCACGGAATTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaccagcatgttcaaaaattctgaacacattatttacataccagcttttgtgtagGGTGGCAAGGTATCAAGAAGCGAACCCTGGATGCTTCACGATCGTTACATTCCCATTCCTCTTTGCGGTTATGTTTGGCGACTGGGGACATGGCATAGCA
                                            cttttgt  CT-rich tract
                          acattatttacata  TA-rich tract