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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacttattttcactcgaaccattaagactcattcttaatcaaattatggaatgtttgaacattaatcacaagcttatctaactgatgtggagaacttcgcacttactctgaggcgttgatgtattaactgaggttttcactactgcagTTCACTCAGGGTGGTGATGCCAAGACTTCAAAACAAGCTACGTCGATGGTCACTACTATCAATATTGTCCTCTTCAGCACTATT

Basic information

species Physcomitrella patens
transcript PP1S113_117V6.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162176499|gb|FC353892.1|FC353892
EST:     GGGCTGGACTAATGAGAGGAGCTGTCTCAATTGCTCTGGCGTTCAATCAG                         TTCACTCAGGGTGGTGATGCCAAGACTTCAAAACAAGCTACGTCGATGGTC
genomic: GGGCTGGACTAATGAGAGGAGCTGTCTCAATTGCTCTGGCGTTCAATCAGgtgacttatt ... actactgcagTTCACTCAGGGTGGTGATGCCAAGACTTCAAAACAAGCTACGTCGATGGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcgcacttactctgaggcgttgatgtattaactgaggttttcactactgcagTTCACTCAGGGTGGTGATGCCAAGACTTCAAAACAAGCTACGTCGATGGTCACTACTATCAATATTGTCCTCTTCAGCACTATT
                            tattaac  putative branch site (score: 1)
                                        ttttcact  putative PPT
                         atgtattaa  TA-rich tract