1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacgttcagaagggtgcatatcacatttcgattacattcctgtgatacttttacatttatagtcaagttgtgactagctctttcccttaacgattgttctgctgtgtatgtactgttttctttcgagtatgaaagtatgtccacctttctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCCAGAAGTTGCAGTAGCCTTCCAGAACCCGAAAGTCCAGGCTGCTATCAT
species | Physcomitrella patens |
transcript | PP1S110_13V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCEST: gi|37850772|gb|BJ608780.1|BJ608780
genomic: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
EST: ATGCTTAAGAACTTCGATCTCCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCEST: gi|162248204|gb|FC423667.1|FC423667
genomic: ATGCTTAAGAACTTCGATCT-CAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
EST: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCEST: gi|162179084|gb|FC356485.1|FC356485
genomic: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
EST: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCEST: gi|162179083|gb|FC356484.1|FC356484
genomic: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
EST: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCEST: gi|37824986|gb|BJ583052.1|BJ583052
genomic: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
EST: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCEST: gi|37853301|gb|BJ611309.1|BJ611309
genomic: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
EST: CATGNTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCEST: gi|208395403|gb|DC924471.1|DC924471
genomic: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
EST: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCEST: gi|162176402|gb|FC353587.1|FC353587
genomic: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
EST: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCEST: gi|162184457|gb|FC359203.1|FC359203
genomic: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
EST: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCEST: gi|162166027|gb|FC340423.1|FC340423
genomic: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
EST: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCEST: gi|37836231|gb|BJ594239.1|BJ594239
genomic: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
EST: ATGCTTAAGAACTTCGATCTCCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCEST: gi|208349470|gb|DC921944.1|DC921944
genomic: ATGCTTAAGAACTTCGATCT-CAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
EST: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCEST: gi|162169704|gb|FC345241.1|FC345241
genomic: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
EST: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCEST: gi|162183778|gb|FC360695.1|FC360695
genomic: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
EST: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCEST: gi|162183777|gb|FC360694.1|FC360694
genomic: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
EST: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCEST: gi|162244160|gb|FC419811.1|FC419811
genomic: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
EST: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCEST: gi|208396401|gb|DC920067.1|DC920067
genomic: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
EST: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTG AGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
genomic: CATGCTTAAGAACTTCGATCTCAACAGCACCGAGGTCAAGCAACAATTTGgtacgttcag ... tctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATC
tgtgtatgtactgttttctttcgagtatgaaagtatgtccacctttctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCCAGAAGTTGCAGTAGCCTTCCAGAACCCGAAAGTCCAGGCTGCTATCAT
tccacctttctgct CT-rich tract
ttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttcagaagggtgcatatcacatttcgattacattcctgtgatacttttacatttatagtcaagttgtgactagctctttcccttaacgattgttctgctgtgtatgtactgttttctttcgagtatgaaagtatgtccacctttctgctgcagAGCAAATTGGGCTGACTCCTGAAGAAGTGGTAGCAAAGATCATGGCAAATCCAGAAGTTGCAGTAGCCTTCCAGAACCCGAAAGTCCAGGCTGCTATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT