1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagctcctctcttgaatgggttttcaaattcatatattttgtaagtaaactatatttatttgtgtgttcttaagtattctatcgtttcatgtttcagGAAAAATATGGAAAGAAGGACCCAGCGTGCGTAGTTGAAGTAAAGCGCGTTTACAATGAACTTGAACTCCAG
species | Physcomitrella patens |
transcript | PP1S101_225V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TAGTTCAAGCCTTAAAGCGTGCCAATGAATCCCAGAAACAGTTATTGAAG GAAAAATATGGAAAGAAGGACCCAGCGTGCGTAGTTGAAGTAAAGCGCGTTEST: gi|67579318|gb|BJ951449.1|BJ951449
genomic: TAGTTCAAGCCTTAAAGCGTGCCAATGAATCCCAGAAACAGTTATTGAAGgtgagctcct ... catgtttcagGAAAAATATGGAAAGAAGGACCCAGCGTGCGTAGTTGAAGTAAAGCGCGTT
EST: AGTTCAAGCCTTAAAGCGTGCCCAATGAATCCCAGAAACAGTTATTGAAG GAAAAATATGGAAAGAAGGACCCAGCGTGCGTAGTTGAAGTAAAGCGCGTTEST: gi|208378429|gb|DC923065.1|DC923065
genomic: AGTTCAAGCCTTAAAGCGTG-CCAATGAATCCCAGAAACAGTTATTGAAGgtgagctcct ... catgtttcagGAAAAATATGGAAAGAAGGACCCAGCGTGCGTAGTTGAAGTAAAGCGCGTT
EST: TAGTTCAAGCCTTAAAGCGTGCCAATGAATCCCAGAAACAGTTATTGAAG GAAAAATATGGAAAGAAGGACCCAGCGTGCGTAGTTGAAGTAAAGCGCGTT
genomic: TAGTTCAAGCCTTAAAGCGTGCCAATGAATCCCAGAAACAGTTATTGAAGgtgagctcct ... catgtttcagGAAAAATATGGAAAGAAGGACCCAGCGTGCGTAGTTGAAGTAAAGCGCGTT
aagtaaactatatttatttgtgtgttcttaagtattctatcgtttcatgtttcagGAAAAATATGGAAAGAAGGACCCAGCGTGCGTAGTTGAAGTAAAGCGCGTTTACAATGAACTTGAACTCCAG
tcgtttc CT-rich tract
aactatatttatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctcctctcttgaatgggttttcaaattcatatattttgtaagtaaactatatttatttgtgtgttcttaagtattctatcgtttcatgtttcagGAAAAATATGGAAAGAAGGACCCAGCGTGCGTAGTTGAAGTAAAGCGCGTTTACAATGAACTTGAACTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG