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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattttgtccagaataggcattgtgagttacacaatccttcgtgaattaaggaacggaggtccttattctgtgctttgtgtggattgtgcaacttgttagTGCCAAAATATTCAATATTTATCCGCGGAAAGGAGCGGTGCTGCCAGGCTCTGATGCAGACATTATCATTTTGAACCCAAATGCAACTACTACTATATCC

Basic information

species Physcomitrella patens
transcript PP1S101_168V6.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S101_168V6.1 (Physcomitrella patens), 3'ss of exon 11
lower sequence: GLYMA14G04030.1 (Glycine max), 3'ss of exon 11
-----tattttgtccagaataggcattgtgagttacacaatccttcgtgaattaaggaac--------ggaggtccttattctgtgctttgtgtg----gattgtgcaa-cttgttagTGCCAAAATATTCAATATTTATCCGCGGAAAGGAGCGGTGCTGCCAGGCTCTGATGCAGACATTATCATTTTGAACCCAAATGCAACTACTACTATATCC
     ||||  ||  |  | ||      | || | |    || |  |  ||| ||  | |          || | |  |   | |   |  |||       || | ||| | | | ||||| ||||| |||||||| |||||  |||||||||| || || ||||| ||||||||||| ||||||||  |||| |||||| | |    |   ||    
gtatatattcagttaatcaaagtgcaaattagcttctagttcttatggaaataaaaaagctttttggtaaagatgccaaaagtattactgatgttttttatttctacaatcatttcagTGCTAAAATCTTCAATATATATCCAAGGAAAGGAGCTGTTCTCCCAGGATCTGATGCAGATATTATCATCCTGAATCCAAATTCGAGCTTTGAGATGAGT

upper sequence: PP1S101_168V6.1 (Physcomitrella patens), 3'ss of exon 11
lower sequence: GLYMA02G44690.1 (Glycine max), 3'ss of exon 11
-------------------------------------tattttgtccagaataggcattgtgagttacacaatccttcgtgaattaaggaacggaggtccttattctgtgctttgtgtggattgtgcaa-cttgttagTGCCAAAATATTCAATATTTATCCGCGGAAAGGAGCGGTGCTGCCAGGCTCTGATGCAGACATTATCATTTTGAACCCAAATGCAACTACTACTATATCC
                                       || |    |  |||          |||    ||   | |   ||   |  |    |  |   ||     |||||| |||   || | ||| | | | ||||| ||||| |||||||| |||||  ||||||||||  | || ||||| ||||||||||| ||||||||  | || |||||| | |    |   ||    
gtatattttcagttaatcaaagtgaaaattatctttcagttcttatgactataaaggaaaactgtttggtaaagatgccaaaaaccaaaagtataactgtataactgatgctttttgt---ttctacaatcatttcagTGCTAAAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTCCCAGGATCTGATGCAGATATTATCATCCTTAATCCAAATTCGAGCTTTGAGATGAGT

upper sequence: PP1S101_168V6.1 (Physcomitrella patens), 3'ss of exon 11
lower sequence: GLYMA15G06100.1 (Glycine max), 3'ss of exon 11
-------------------------------------------------------------tattttgtccaga-ataggcattgtgagtt-acacaatccttcgtgaattaaggaacggaggtccttattctgtgctttgtgtggattgtgcaact-tgttagTGCCAAAATATTCAATATTTATCCGCGGAAAGGAGCGGTGCTGCCAGGCTCTGATGCAGACATTATCATTTTGAACCCAAATGCAACTACTACTATATCC
                                                              |   | |  |   ||    ||| | | || |   |   ||| ||  |      ||  |   | || ||| |    | | | |   || | |||   | ||||||| | ||| |||||||| |||||  ||||||||||  | || ||||| ||||||||||| ||||||||  | || |||||| ||||   |   ||| | 
gtatattttctgttaatcaaagtaaaattagcatccagttcttatagtaataaggagaattcagagtatttaattatttttattttaatttgatgaagctctttgtatagatgccaaaagtattactgatttttatttatttat---ttctacaatcattttagTGCTAGAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTTCCAGGATCTGATGCAGATATTATCATCCTCAATCCAAATTCAACCTTTGAGATAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaaggaacggaggtccttattctgtgctttgtgtggattgtgcaacttgttagTGCCAAAATATTCAATATTTATCCGCGGAAAGGAGCGGTGCTGCCAGGCTCTGATGCAGACATTATCATTTTGAACCCAAATGCAACTACTACTATATCC
                  ttattct  TA-rich tract