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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcatttatttgtacttctgacagacagagctccgcattttctggttctagagaacgatttatttacaaactgattacttggtattcttgattacgagcagGGTCAAGAAATCTCTTCCAGAGGAATTAAGGAAAAAGCCTGAAGCGTCATTTCTGACAGCCTTAGTGTCGGCCTCCTTCGCTACGACCATGTGTTATCCG

Basic information

species Physcomitrella patens
transcript PP1S91_149V6.5
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162152927|gb|FC329229.1|FC329229
EST:     GCGTGTTTGACTT                         GGTCAAGAAATTTCTTCCAGAGGAATTAAGGAAAAAGCCTGAAGCGTCATT
genomic: GCGTGTTTGACTTgtacgttcac ... ttacgagcagGGTCAAGAAATCTCTTCCAGAGGAATTAAGGAAAAAGCCTGAAGCGTCATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctagagaacgatttatttacaaactgattacttggtattcttgattacgagcagGGTCAAGAAATCTCTTCCAGAGGAATTAAGGAAAAAGCCTGAAGCGTCATTTCTGACAGCCTTAGTGTCGGCCTCCTTCGCTACGACCATGTGTTATCCG
           atttatttacaaact  TA-rich tract