1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatcatcttcacggcttgttttagacatggctacacttcaattttaaaaacagatatctgacagatcgttgttgtgtgcatcagATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTCAACACAGTTGCTACTTTAGTTGCAAAAGCCAAAATCAAGTCCAAGATGA
species | Physcomitrella patens |
transcript | PP1S89_217V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAATCCTTCTGCTGAAGACTGCTATTCTGGAGGATGAATCCGAGTGGCAG ATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTCEST: gi|162250599|gb|FC428190.1|FC428190
genomic: GAATCCTTCTGCTGAAGACTGCTATTCTGGAGGATGAATCCGAGTGGCAGgtaatcatct ... tgtgcatcagATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTC
EST: GAATCCTTCTGCTGAAGACTGCTATTCTGGAGGATGAATCCGAGTGGCAG ATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTCEST: gi|162250598|gb|FC428189.1|FC428189
genomic: GAATCCTTCTGCTGAAGACTGCTATTCTGGAGGATGAATCCGAGTGGCAGgtaatcatct ... tgtgcatcagATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTC
EST: GAATCCTTCTGCTGAAGACTGCTATTCTGGAGGATGAATCCGAGTGGCAG ATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTCEST: gi|208387444|gb|DC949229.1|DC949229
genomic: GAATCCTTCTGCTGAAGACTGCTATTCTGGAGGATGAATCCGAGTGGCAGgtaatcatct ... tgtgcatcagATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTC
EST: GAATCCTTCTGCTGAAGACTGCTATTCTGGAGGATGAATCCGAGTGGCAG ATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTCEST: gi|208395643|gb|DC924193.1|DC924193
genomic: GAATCCTTCTGCTGAAGACTGCTATTCTGGAGGATGAATCCGAGTGGCAGgtaatcatct ... tgtgcatcagATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTC
EST: GAATCCTTCTGCTGAAGACTGCTATTCTGGAGGATGAATCCGAGTGGCAG ATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTCEST: gi|67701379|gb|BJ961612.1|BJ961612
genomic: GAATCCTTCTGCTGAAGACTGCTATTCTGGAGGATGAATCCGAGTGGCAGgtaatcatct ... tgtgcatcagATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTC
EST: GAATCCTTCTGCTGAAGACTGCTATTCTGGAGGATGAATCCGAGTGGCAG ATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTCEST: gi|208347899|gb|DC917606.1|DC917606
genomic: GAATCCTTCTGCTGAAGACTGCTATTCTGGAGGATGAATCCGAGTGGCAGgtaatcatct ... tgtgcatcagATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTC
EST: GAATCCTTCTGCTGAAGACTGCTATTCTGGAGGATGAATCCGAGTGGCAG ATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTCEST: gi|208363415|gb|DC947013.1|DC947013
genomic: GAATCCTTCTGCTGAAGACTGCTATTCTGGAGGATGAATCCGAGTGGCAGgtaatcatct ... tgtgcatcagATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTC
EST: GAATCCTTCTGCTGAAGACTGCTATTCTGGAGGATGAATCCGAGTGGCAG ATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTC
genomic: GAATCCTTCTGCTGAAGACTGCTATTCTGGAGGATGAATCCGAGTGGCAGgtaatcatct ... tgtgcatcagATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTC
gctacacttcaattttaaaaacagatatctgacagatcgttgttgtgtgcatcagATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTCAACACAGTTGCTACTTTAGTTGCAAAAGCCAAAATCAAGTCCAAGATGA
atctgac putative branch site (score: 24)
ttcaattttaaaaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcatcttcacggcttgttttagacatggctacacttcaattttaaaaacagatatctgacagatcgttgttgtgtgcatcagATGGTGGTTTGTGGGTTGTTGTTGATTCTAATGGCGTGCGGCAATTTTGTCAACACAGTTGCTACTTTAGTTGCAAAAGCCAAAATCAAGTCCAAGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG