1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtattggttctaacttcgagccaggcttaacaatactcatattcttgcatccagtttcatcataggagatacttcttcccatttgatcgttagtgatggaaggttgtaagcctttagttgatctaatgtaatgatgatgatgcagATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAG
species | Physcomitrella patens |
transcript | PP1S85_75V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATCGGCAGTTACAAAATAGACAG ATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAGEST: gi|208370179|gb|DC944404.1|DC944404
genomic: ATCGGCAGTTACAAAATAGACAGgtattggttc ... gatgatgcagATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAG
EST: ACATTACAGAAGGTCAAATTTACGTGGATCGGCAGTTACAAAATAGACAG ATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAGEST: gi|162274940|gb|FC450591.1|FC450591
genomic: ACATTACAGAAGGTCAAATTTACGTGGATCGGCAGTTACAAAATAGACAGgtattggttc ... gatgatgcagATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAG
EST: ACATTACAGAAGGTCAAATTTACGTGGATCGGCAGTTACAAAATAGACAG ATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAGEST: gi|162274941|gb|FC450592.1|FC450592
genomic: ACATTACAGAAGGTCAAATTTACGTGGATCGGCAGTTACAAAATAGACAGgtattggttc ... gatgatgcagATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAG
EST: ACATTACAGAAGGTCAAATTTACGTGGATCGGCAGTTACAAAATAGACAG ATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAGEST: gi|208345114|gb|DC925440.1|DC925440
genomic: ACATTACAGAAGGTCAAATTTACGTGGATCGGCAGTTACAAAATAGACAGgtattggttc ... gatgatgcagATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAG
EST: ACATTACAGAAGGTCAAATTTACGTGGATCGGCAGTTACAAAATAGACAG ATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAGEST: gi|67698442|gb|BJ958675.1|BJ958675
genomic: ACATTACAGAAGGTCAAATTTACGTGGATCGGCAGTTACAAAATAGACAGgtattggttc ... gatgatgcagATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAG
EST: ACATTACAGAAGGTCAAATTTACGTGGATCGGCAGTTACAAAATAGACAG ATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAGEST: gi|18337987|gb|BJ170011.1|BJ170011
genomic: ACATTACAGAAGGTCAAATTTACGTGGATCGGCAGTTACAAAATAGACAGgtattggttc ... gatgatgcagATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAG
EST: AGTTACAAAATAGACAG ATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAG
genomic: AGTTACAAAATAGACAGgtattggttc ... gatgatgcagATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAG
tagtgatggaaggttgtaagcctttagttgatctaatgtaatgatgatgatgcagATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAG
atctaat putative branch site (score: 4)
taatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattggttctaacttcgagccaggcttaacaatactcatattcttgcatccagtttcatcataggagatacttcttcccatttgatcgttagtgatggaaggttgtaagcctttagttgatctaatgtaatgatgatgatgcagATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC