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gtgcgacacaagccatataccgtgtcgaggttaattactagcagtatggaaacagatcagctcacctcattcccatttgagcgtcagggataatcatgaaacttgctaattgtgcgtttcctggggcttggcaacaatttcagGGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCATAATAAGGAG
species | Physcomitrella patens |
transcript | PP1S83_234V6.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTGAAAAACAAGTCATCACGCCAACAG GGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCAEST: gi|162155634|gb|FC331559.1|FC331559
genomic: CTGAAAAACAAGTCATCACGCCAACAGgtgcgacaca ... acaatttcagGGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
EST: TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAG GGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCAEST: gi|162250016|gb|FC427117.1|FC427117
genomic: TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAGgtgcgacaca ... acaatttcagGGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
EST: TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAG GGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCAEST: gi|162159567|gb|FC335745.1|FC335745
genomic: TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAGgtgcgacaca ... acaatttcagGGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
EST: TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAG GGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCAEST: gi|162250017|gb|FC427118.1|FC427118
genomic: TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAGgtgcgacaca ... acaatttcagGGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
EST: TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAG GGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCAEST: gi|162247262|gb|FC423060.1|FC423060
genomic: TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAGgtgcgacaca ... acaatttcagGGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
EST: TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAG GGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
genomic: TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAGgtgcgacaca ... acaatttcagGGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
gataatcatgaaacttgctaattgtgcgtttcctggggcttggcaacaatttcagGGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCATAATAAGGAG
tgctaat putative branch site (score: 5)
aacaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgacacaagccatataccgtgtcgaggttaattactagcagtatggaaacagatcagctcacctcattcccatttgagcgtcagggataatcatgaaacttgctaattgtgcgtttcctggggcttggcaacaatttcagGGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCATAATAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG