1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tctggatgtattactttgatgtatgggttaacaatattgcggttgataaagagaatgcagctggactcacctttcgtgacgatatgtttcctcaccgcagGTTCTGTTGGAAGAGCAGGAAATCCAGCTGCTTACGTTGGTGCTAAGGAGTACACAGATCCTCGCCGAGTGTCTAAAACTGCCTCAATGAGCACCACTAA
species | Physcomitrella patens |
transcript | PP1S80_71V6.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTCTGGTCAGAGGAACGTTTATTCTCAAAATTCCTCCAAATCTCAAGATG GTTCTGTTGGAAGAGCAGGAAATCCAGCTGCTTACGTTGGTGCTAAGGAGTEST: gi|37838512|gb|BJ596520.1|BJ596520
genomic: TTCTGGTCAGAGGAACGTTTATTCTCAAAATTCCTCCAAATCTCAAGATGgtatccattt ... ctcaccgcagGTTCTGTTGGAAGAGCAGGAAATCCAGCTGCTTACGTTGGTGCTAAGGAGT
EST: TTCTGGTCAGAGGAACGTTTATTCTCAAAATTCCTCCAAATCTCAAGATG GTTCTGTTGGAAGAGCAGGAAATCCAGCTGCTTACGTTGGTGCTAAGGAGTEST: gi|162156766|gb|FC333583.1|FC333583
genomic: TTCTGGTCAGAGGAACGTTTATTCTCAAAATTCCTCCAAATCTCAAGATGgtatccattt ... ctcaccgcagGTTCTGTTGGAAGAGCAGGAAATCCAGCTGCTTACGTTGGTGCTAAGGAGT
EST: TTCTGGTCAGAGGAACGTTTATTCTCAAAATTCCTCCAAATCTCAAGATG GTTCTGTTGGAAGAGCAGGAAATCCAGCTGCTTACGTTGGTGCTAAGGAGTEST: gi|37851583|gb|BJ609591.1|BJ609591
genomic: TTCTGGTCAGAGGAACGTTTATTCTCAAAATTCCTCCAAATCTCAAGATGgtatccattt ... ctcaccgcagGTTCTGTTGGAAGAGCAGGAAATCCAGCTGCTTACGTTGGTGCTAAGGAGT
EST: TTCTGGTCAGAGGAACGTTTATTCTCAAAATTCCTCCAAATCTCAAGATG GTTCTGTTGGAAGAGCAGGAAATCCAGCTGCTTACGTTGGTGCTAAGGAGTEST: gi|37838906|gb|BJ596914.1|BJ596914
genomic: TTCTGGTCAGAGGAACGTTTATTCTCAAAATTCCTCCAAATCTCAAGATGgtatccattt ... ctcaccgcagGTTCTGTTGGAAGAGCAGGAAATCCAGCTGCTTACGTTGGTGCTAAGGAGT
EST: TTCTGGTCAGAGGAACGTTTATTCTCAAAATTCCTCCAAATCTCAAGATG GTTCTGTTGGAAGAGCAGGAAATCCAGCTGCTTACGTTGGTGCTAAGGAGT
genomic: TTCTGGTCAGAGGAACGTTTATTCTCAAAATTCCTCCAAATCTCAAGATGgtatccattt ... ctcaccgcagGTTCTGTTGGAAGAGCAGGAAATCCAGCTGCTTACGTTGGTGCTAAGGAGT
ataaagagaatgcagctggactcacctttcgtgacgatatgtttcctcaccgcagGTTCTGTTGGAAGAGCAGGAAATCCAGCTGCTTACGTTGGTGCTAAGGAGTACACAGATCCTCGCCGAGTGTCTAAAACTGCCTCAATGAGCACCACTAA
tcctcac putative branch site (score: 13)
tttcctcacc CT-rich tract
atatgttt TA-rich tract