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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgaaaatttcaatttcttatcatgcaagcgccatgaattgtgaagctcaggagttgtatgttctgatttttacgtcgatcgatggctcgtttttgcagTTCCAGGAGGATGCTATCTTAGTTCCTCCTCAAACAGCTTGGTTTGGTTACTATGGTGAGAATGATTTCACTACTGTACTACCTCCTGAAAGG

Basic information

species Physcomitrella patens
transcript PP1S79_112V6.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208373302|gb|DC948576.1|DC948576
EST:     AAACCTACAAAAAGAGATTCGAAAGTATTAATCACCTGGTGTTGATTATG                         TTCCAGGAGGATGCTATCTTAGTTCCTCCTCAAACAGCTTGGTTTGGTTAC
genomic: AAACCTACAAAAAGAGATTCGAAAGTATTAATCACCTGGTGTTGATTATGgtaagtctct ... gtttttgcagTTCCAGGAGGATGCTATCTTAGTTCCTCCTCAAACAGCTTGGTTTGGTTAC
EST: gi|162238396|gb|FC417355.1|FC417355
EST:     AAACCTACAAAAAGAGATTCGAAAGTATTAATCACCTGGTGTTGATTATG                         TTCCAGGAGGATGCTATCTTAGTTCCTCCTCAAACAGCTTGGTTTGGTTAC
genomic: AAACCTACAAAAAGAGATTCGAAAGTATTAATCACCTGGTGTTGATTATGgtaagtctct ... gtttttgcagTTCCAGGAGGATGCTATCTTAGTTCCTCCTCAAACAGCTTGGTTTGGTTAC
EST: gi|162253083|gb|FC428915.1|FC428915
EST:     AAACCTACAAAAAGAGATTCGAAAGTATTAATCACCTGGTGTTGATTATG                         TTCCAGGAGGATGCTATCTTAGTTCCTCCTCAAACAGCTTGGTTTGGTTAC
genomic: AAACCTACAAAAAGAGATTCGAAAGTATTAATCACCTGGTGTTGATTATGgtaagtctct ... gtttttgcagTTCCAGGAGGATGCTATCTTAGTTCCTCCTCAAACAGCTTGGTTTGGTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctcaggagttgtatgttctgatttttacgtcgatcgatggctcgtttttgcagTTCCAGGAGGATGCTATCTTAGTTCCTCCTCAAACAGCTTGGTTTGGTTACTATGGTGAGAATGATTTCACTACTGTACTACCTCCTGAAAGG
                 ttctgat  putative branch site (score: 3)
                                          ctcgttttt  putative PPT
                    tgattttta  TA-rich tract