1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgtgatattatgttgtgtttttcgattgtcttgggctctcaaattttagcattgaactctgccaggtagtgttttccaggtttggttttggtgtgcgtgtttggggagtttagagttgcaggtaggtcgttggtgattgcaacgattgccgaagtgtaatgtacttgtgaacgcccttttcatgcagAATTGAAAGGTGCCTCTCCTGAGATTCTGCAGCGGTTGTTACCTGAGCACGCAAGGAAGCAAAATCCGATGCTTGCATTGTAAGCGTGATGTGGAGAGAA
species | Physcomitrella patens |
transcript | PP1S74_168V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGCCGAGTGGGCGGCCTCTGCCCCCCGCTGTTTAATTTTAAGCGTCANG AATTGAAAAGTGCCTCTCCTGAGATTCTGCAGCGGTTGTTACCTGANCACGEST: gi|208367815|gb|DC944061.1|DC944061
genomic: TTGCCGAGTGGGCGGCCTCTG-CCCCCGCTGTTTAATTTTAAGCGTCAAGgtgtgatatt ... tttcatgcagAATTGAAAGGTGCCTCTCCTGAGATTCTGCAGCGGTTGTTACCTGAGCACG
EST: TTTGCCGAGTGGGCGGCCTCTGCCCCCGCTGTTTAATTTTAAGCGTCAAG AATTGAAAGGTGCCTCTCCTGAGATTCTGCAGCGGTTGTTACCTGAGCACGEST: gi|162190341|gb|FC365355.1|FC365355
genomic: TTTGCCGAGTGGGCGGCCTCTGCCCCCGCTGTTTAATTTTAAGCGTCAAGgtgtgatatt ... tttcatgcagAATTGAAAGGTGCCTCTCCTGAGATTCTGCAGCGGTTGTTACCTGAGCACG
EST: TTTGCCGAGTGGGCGGCCTCTGCCCCCGCTGTTTAATTTTAAGCGTCAAG AATTGAAAGGTGCCTCTCCTGAGATTCTGCAGCGGTTGTTACCTGAGCACGEST: gi|162171284|gb|FC347222.1|FC347222
genomic: TTTGCCGAGTGGGCGGCCTCTGCCCCCGCTGTTTAATTTTAAGCGTCAAGgtgtgatatt ... tttcatgcagAATTGAAAGGTGCCTCTCCTGAGATTCTGCAGCGGTTGTTACCTGAGCACG
EST: TTTGCCGAGTGGGCGGCCTCTGCCCCCGCTGTTTAATTTTAAGCGTCAAG AATTGAAAGGTGCCTCTCCTGAGATTCTGCAGCGGTTGTTACCTGAGCACGEST: gi|162190342|gb|FC365356.1|FC365356
genomic: TTTGCCGAGTGGGCGGCCTCTGCCCCCGCTGTTTAATTTTAAGCGTCAAGgtgtgatatt ... tttcatgcagAATTGAAAGGTGCCTCTCCTGAGATTCTGCAGCGGTTGTTACCTGAGCACG
EST: TTTGCCGAGTGGGCGGCCTCTGCCCCCGCTGTTTAATTTTAAGCGTCAAG AATTGAAAGGTGCCTCTCCTGAGATTCTGCAGCGGTTGTTACCTGAGCACGEST: gi|162280066|gb|FC456460.1|FC456460
genomic: TTTGCCGAGTGGGCGGCCTCTGCCCCCGCTGTTTAATTTTAAGCGTCAAGgtgtgatatt ... tttcatgcagAATTGAAAGGTGCCTCTCCTGAGATTCTGCAGCGGTTGTTACCTGAGCACG
EST: TTTGCCGAGTGGGCGGCCTCTGCCCCCGCTGTTTAATTTTAAGCGTCAAG AATTGAAAGGTGCCTCTCCTGAGATTCTGCAGCGGTTGTTACCTGAGCACG
genomic: TTTGCCGAGTGGGCGGCCTCTGCCCCCGCTGTTTAATTTTAAGCGTCAAGgtgtgatatt ... tttcatgcagAATTGAAAGGTGCCTCTCCTGAGATTCTGCAGCGGTTGTTACCTGAGCACG
gtgattgcaacgattgccgaagtgtaatgtacttgtgaacgcccttttcatgcagAATTGAAAGGTGCCTCTCCTGAGATTCTGCAGCGGTTGTTACCTGAGCACGCAAGGAAGCAAAATCCGATGCTTGCATTGTAAGCGTGATGTGGAGAGAA
cgcccttttc CT-rich tract
taatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgatattatgttgtgtttttcgattgtcttgggctctcaaattttagcattgaactctgccaggtagtgttttccaggtttggttttggtgtgcgtgtttggggagtttagagttgcaggtaggtcgttggtgattgcaacgattgccgaagtgtaatgtacttgtgaacgcccttttcatgcagAATTGAAAGGTGCCTCTCCTGAGATTCTGCAGCGGTTGTTACCTGAGCACGCAAGGAAGCAAAATCCGATGCTTGCATTGTAAGCGTGATGTGGAGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA