Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtttgctaacttttactttatctgtactttccagttccggaatgcttctattttatggagctggttccaagtgtttcaaggacttttgttatttatctaaaagtaatacgatagttttattgcaaaaacgtacgagatagtacatgttcagtaaggctaatacatacatgtatcgtttgagtctcaacagACTAGCAGCTGTGGTTCTTGTGAGGAGCCGCTTGATTCGCATGTTCATTGTTATACACATCGCCAAGGGAGTTTGACTATTTCAGTTCAACGACTGAGAG

Basic information

species Physcomitrella patens
transcript PP1S65_215V6.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S65_215V6.1 (Physcomitrella patens), 3'ss of exon 10
lower sequence: Vv11s0016g00360.t01 (Vitis vinifera), 3'ss of exon 8
gtgcgtttgctaacttttactttatctgtactttccagttccggaatgcttctattttatggagctggttccaagtgtttcaaggacttttgttatttatctaaaagtaatacgatagttttattgcaaaaacgtacgagatagtacatgttcagtaaggctaatacatacatgtatcgtttgagtctcaacagACTAGCAGCTGTGGTTCTTGTGAGGAGCCGCTTGATTCGCATGTTCATTGTTATACACATCGCCAAGGGAGTTTGACTATTTCAGTTCAACGACTGAGAG
                                                                          || |||       |||| |  | | |   |   | |||   |  |||  |||  ||  | ||| ||     |||| || |    | |||      ||   |  | |||       |  ||| |    ||||  |||| || ||   |||    ||  | ||||||||||||||||||||||| ||||| ||  | |||||||| ||  |    ||   ||
--------------------------------------------------------------------------gtatttt------ttttctcttcttttacatgattatatacttctttccttgtcaaccc-tacaag----cacatttttacattgactag-----actcattccattt-------attagAGTTATTGCTGCCGTTCATGCGATATGCCATCAGAAGCACATGTTCATTGTTATACACATCGTCAAGGCAGCCTTACTATTTCTGTGAAGAAGCTTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatagtacatgttcagtaaggctaatacatacatgtatcgtttgagtctcaacagACTAGCAGCTGTGGTTCTTGTGAGGAGCCGCTTGATTCGCATGTTCATTGTTATACACATCGCCAAGGGAGTTTGACTATTTCAGTTCAACGACTGAGAG
                   ggctaat  putative branch site (score: 3)
                      taatacata  TA-rich tract