1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagtagcttcacttacagacagttgggtgcgttggattgtgatgtttgtgtggcgtttgcgaggcatgattttaaagcgagtttgcaacgacagcatatcgatgcagttgaatacgatactgcgttgcagatgattgacatgacgatattaagcaagtggttgttatttgcagCTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGCCGCCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTC
species | Physcomitrella patens |
transcript | PP1S60_100V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCTGGTTTCAAGACTTCTACAGTTACTCTCCAAATCTGCGATGCAATGCT CTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGCEST: gi|162249128|gb|FC420379.1|FC420379
genomic: CCTGGTTTCAAGACTTCTACAG-TACTCTCCAAATCTGCGATGCAATGCTgtgagtagct ... ttatttgcagCTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGC
EST: ACCTGGTTTCAAGACTTCTACAGTACTCTCCNAATCTGCGATGCAATGCT CTGGAAGCGTGTGTGCACCCTTTCTTTGATGEST: gi|37836905|gb|BJ594913.1|BJ594913
genomic: ACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCTgtgagtagct ... ttatttgcagCTGGAAGCGTGTGTGCACCCTTTCTTTGATG
EST: ACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCT CTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGCEST: gi|162249101|gb|FC420378.1|FC420378
genomic: ACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCTgtgagtagct ... ttatttgcagCTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGC
EST: ACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCT CTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGCEST: gi|18339293|gb|BJ171320.1|BJ171320
genomic: ACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCTgtgagtagct ... ttatttgcagCTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGC
EST: ACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCT CTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGCEST: gi|18333045|gb|BJ165059.1|BJ165059
genomic: ACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCTgtgagtagct ... ttatttgcagCTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGC
EST: ACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCT CTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGCEST: gi|162165970|gb|FC341801.1|FC341801
genomic: ACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCTgtgagtagct ... ttatttgcagCTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGC
EST: ACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCT CTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGCEST: gi|37837915|gb|BJ595923.1|BJ595923
genomic: ACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCTgtgagtagct ... ttatttgcagCTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGC
EST: ACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCT CTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGC
genomic: ACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCTgtgagtagct ... ttatttgcagCTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGC
actgcgttgcagatgattgacatgacgatattaagcaagtggttgttatttgcagCTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGCCGCCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTC
gattgac putative branch site (score: 21)
ttgttattt TA-rich tract