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gtgagctgattcgtatctgatcttttactatgcaaatctttcaattgtagcttacatattgttgctcctaatgaagctattctagttgatttaatgtgtttgatggttttaaatgtacagATGTCAAAATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACACCTGAT
species | Physcomitrella patens |
transcript | PP1S5_195V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCCCTGAGACGTGTGCTAGGGTTATGTCGCTGACAGACGGCACTGCAAAA ATGTCAAAATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACAEST: gi|67571511|gb|BJ944335.1|BJ944335
genomic: TCCCTGAGACGTGTGCTAGGGTTATGTCGCTGACAGACGGCACTGCAAAAgtgagctgat ... aaatgtacagATGTCAAAATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACA
EST: TCCCTGAGACGTGTGCTAGGGTTATGTCGCTGACAGACGGCACTGCAAAA ATGTCAAAATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACAEST: gi|162232167|gb|FC407730.1|FC407730
genomic: TCCCTGAGACGTGTGCTAGGGTTATGTCGCTGACAGACGGCACTGCAAAAgtgagctgat ... aaatgtacagATGTCAAAATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACA
EST: TCCCTGAGACGTGTGCTAGGGTTATGTCGCTGACAGACGGCACTGCANAA ATGTCAAAATCAGCTCCTTCAGATCTCTCACGGATTAACCTTTCT-GATACEST: gi|162159330|gb|FC335144.1|FC335144
genomic: TCCCTGAGACGTGTGCTAGGGTTATGTCGCTGACAGACGGCACTGCAAAAgtgagctgat ... aaatgtacagATGTCAAAATCAGCTCCTTCAGATCTCTCACGGATTAACCTT-CTTGATAC
EST: TCCCTGAGACGTGTGCTAGGGTTATGTCGCTGACAGACGGCACTGCAAAA ATGTCAAAATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACA
genomic: TCCCTGAGACGTGTGCTAGGGTTATGTCGCTGACAGACGGCACTGCAAAAgtgagctgat ... aaatgtacagATGTCAAAATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACA
tcctaatgaagctattctagttgatttaatgtgtttgatggttttaaatgtacagATGTCAAAATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACACCTGAT
ttttaaatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctgattcgtatctgatcttttactatgcaaatctttcaattgtagcttacatattgttgctcctaatgaagctattctagttgatttaatgtgtttgatggttttaaatgtacagATGTCAAAATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACACCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC