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...atccggaatatagcatttggtggtaatgttttttagagaaagagtgatttggtgggcacaagatttgattgttcactcttctgttgtgatcatgcgccagGAAGCCGAGAAGCACCTCTCAGAAATGGTGGTATCAAAGGCGTTGGTTGCGAAGGTTGATAGACCTGCAGGCGTGGTGTGTTTCATCAGCAAGATGGACA
species | Physcomitrella patens |
transcript | PP1S58_256V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGAATCACATTGAAGAGGCTCTCAGAATTTGT-GTGCCTCACTGGCCAG GAAGCCGAGAAGCACCTCTCAGAAATEST: gi|37823682|gb|BJ581748.1|BJ581748
genomic: AAGAATCACATTGAAGAGGCTCTCAGAATT-GTTGTGCCTCACTGGCCAGgtaagtcagc ... catgcgccagGAAGCCGAGAAGCACCTCTCAGAAAT
EST: CAAGAATCACATTGAAGAGGCTCTCAGAATTGTTGTGCCTCACTGGCCAG GAAGCCGAGAAGCACCTCTCAGAAATGGTGGTATCAAAGGCGTTGGTTGCGEST: gi|19784261|gb|BQ040146.1|BQ040146
genomic: CAAGAATCACATTGAAGAGGCTCTCAGAATTGTTGTGCCTCACTGGCCAGgtaagtcagc ... catgcgccagGAAGCCGAGAAGCACCTCTCAGAAATGGTGGTATCAAAGGCGTTGGTTGCG
EST: CAAGAATCACATTGAAGAGGCTCTCAGAATTGTTGTGCCTCACTGGCCAG GAAGCCGAGAAGCACCTCTCAGAAATGGTGGTATCAAAGGCGTTGGTTGCGEST: gi|162269558|gb|FC445114.1|FC445114
genomic: CAAGAATCACATTGAAGAGGCTCTCAGAATTGTTGTGCCTCACTGGCCAGgtaagtcagc ... catgcgccagGAAGCCGAGAAGCACCTCTCAGAAATGGTGGTATCAAAGGCGTTGGTTGCG
EST: CAAGAATCACATTGAAGAGGCTCTCAGAATTGTTGTGCCTCACTGGCCAG GAAGCCGAGAAGCACCTCTCAGAAATGGTGGTATCAAAGGCGTTGGTTGCGEST: gi|162156857|gb|FC332803.1|FC332803
genomic: CAAGAATCACATTGAAGAGGCTCTCAGAATTGTTGTGCCTCACTGGCCAGgtaagtcagc ... catgcgccagGAAGCCGAGAAGCACCTCTCAGAAATGGTGGTATCAAAGGCGTTGGTTGCG
EST: CAAGAATCACATTGAAGAGGCTCTCAGAATTGTTGTGCCTCACTGGCCAG GAAGCCGAGAAGCACCTCTCAGAAATGGTGGTATCAAAGGCGTTGGTTGCGEST: gi|162226295|gb|FC403003.1|FC403003
genomic: CAAGAATCACATTGAAGAGGCTCTCAGAATTGTTGTGCCTCACTGGCCAGgtaagtcagc ... catgcgccagGAAGCCGAGAAGCACCTCTCAGAAATGGTGGTATCAAAGGCGTTGGTTGCG
EST: CAAGAATCACATTGAAGAGGCTCTCAGAATTGTTGTGCCTCACTGGCCAG GAAGCCGAGAAGCACCTCTCAGAAATGGTGGTATCAAAGGCGTTGGTTGCGEST: gi|162225702|gb|FC401844.1|FC401844
genomic: CAAGAATCACATTGAAGAGGCTCTCAGAATTGTTGTGCCTCACTGGCCAGgtaagtcagc ... catgcgccagGAAGCCGAGAAGCACCTCTCAGAAATGGTGGTATCAAAGGCGTTGGTTGCG
EST: CAAGAATCACATTGAAGAGGCTCTCAGAATTGTTGTGCCTCACTGGCCAG GAAGCCGAGAAGCACCTCTCAGAAATGGTGGTATCAAAGGCGTTGGTTGCGEST: gi|37822290|gb|BJ580356.1|BJ580356
genomic: CAAGAATCACATTGAAGAGGCTCTCAGAATTGTTGTGCCTCACTGGCCAGgtaagtcagc ... catgcgccagGAAGCCGAGAAGCACCTCTCAGAAATGGTGGTATCAAAGGCGTTGGTTGCG
EST: CAAGAATCACATTGAAGAGGCTCTCAGAATTGTTGTGCCTCACTGGCCAG GAAGCCGAGAAGCACCTCTCAGAAATGGTGGTATCAAAGGCGTTGGTTGCG
genomic: CAAGAATCACATTGAAGAGGCTCTCAGAATTGTTGTGCCTCACTGGCCAGgtaagtcagc ... catgcgccagGAAGCCGAGAAGCACCTCTCAGAAATGGTGGTATCAAAGGCGTTGGTTGCG
gatttggtgggcacaagatttgattgttcactcttctgttgtgatcatgcgccagGAAGCCGAGAAGCACCTCTCAGAAATGGTGGTATCAAAGGCGTTGGTTGCGAAGGTTGATAGACCTGCAGGCGTGGTGTGTTTCATCAGCAAGATGGACA
atttgat putative branch site (score: 8)
atttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccggaatatagcatttggtggtaatgttttttagagaaagagtgatttggtgggcacaagatttgattgttcactcttctgttgtgatcatgcgccagGAAGCCGAGAAGCACCTCTCAGAAATGGTGGTATCAAAGGCGTTGGTTGCGAAGGTTGATAGACCTGCAGGCGTGGTGTGTTTCATCAGCAAGATGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA