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...ttttgttctcttgaaactagataccacatgttccttagtattatgtcttgtggctgtgattttagctccgtcccataatctgtacatgttgatattccagGTTTGGACAAGTGCTTGCTTCAAGAGCTGTGAGAGCTGCCCATTGCCTTACTTCAATCCAG
species | Physcomitrella patens |
transcript | PP1S58_234V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCACAGCAAGTCATATATGAGTTGCGAGTGTACTCACTTGAAGAGGCCAC GTTTGGACAAGTGCTTGCTTCAAGAGCTGTGAGAGCTGCCCATTGCCTTACEST: gi|162179705|gb|FC355763.1|FC355763
genomic: TCACAGCAAGTCATATATGAGTTGCGAGTGTACTCACTTGAAGAGGCCACgtaagttttt ... gatattccagGTTTGGACAAGTGCTTGCTTCAAGAGCTGTGAGAGCTGCCCATTGCCTTAC
EST: TCATATATGAGTTGCGAGTGTACTCACTTGAAGAGGCCAC GTTTGGACAAGTGCTTGCTTCAAGAGCTGTGAGAGCTGCCCATTGCCTTACEST: gi|162179706|gb|FC355764.1|FC355764
genomic: TCATATATGAGTTGCGAGTGTACTCACTTGAAGAGGCCACgtaagttttt ... gatattccagGTTTGGACAAGTGCTTGCTTCAAGAGCTGTGAGAGCTGCCCATTGCCTTAC
EST: TCACAGCAAGTCATATATGAGTTGCGAGTGTACTCACTTGAAGAGGCCAC GTTTGGACAAGTGCTTGCTTCAAGAGCTGTGAGAGCTGCCCATTGCCTTACEST: gi|162193793|gb|FC368707.1|FC368707
genomic: TCACAGCAAGTCATATATGAGTTGCGAGTGTACTCACTTGAAGAGGCCACgtaagttttt ... gatattccagGTTTGGACAAGTGCTTGCTTCAAGAGCTGTGAGAGCTGCCCATTGCCTTAC
EST: CACAGCAAGTCATATATGAGTTGCGAGTGTACTCAC-TGAAAGAGGCCAC GTTTGGACAAGTGCTTGCTTCAAGAGCTGTGAGAGCTGCCCATTGCCTTACEST: gi|162247571|gb|FC420535.1|FC420535
genomic: CACAGCAAGTCATATATGAGTTGCGAGTGTACTCACTTG-AAGAGGCCACgtaagttttt ... gatattccagGTTTGGACAAGTGCTTGCTTCAAGAGCTGTGAGAGCTGCCCATTGCCTTAC
EST: TCACAGCAAGTCATATATGAGTTGCGAGTGTACTCACTTGAAGAGGCCAC GTTTGGACAAGTGCTTGCTTCAAGAGCTGTGAGAGCTGCCCATTGCCTTACEST: gi|162209696|gb|FC386195.1|FC386195
genomic: TCACAGCAAGTCATATATGAGTTGCGAGTGTACTCACTTGAAGAGGCCACgtaagttttt ... gatattccagGTTTGGACAAGTGCTTGCTTCAAGAGCTGTGAGAGCTGCCCATTGCCTTAC
EST: TCACAGCAAGTCATATATGAGTTGCGAGTGTACTCACTTGAAGAGGCCAC GTTTGGACAAGTGCTTGCTTCAAGAGCTGTGAGAGCTGCCCATTGCCTTAC
genomic: TCACAGCAAGTCATATATGAGTTGCGAGTGTACTCACTTGAAGAGGCCACgtaagttttt ... gatattccagGTTTGGACAAGTGCTTGCTTCAAGAGCTGTGAGAGCTGCCCATTGCCTTAC
tcttgtggctgtgattttagctccgtcccataatctgtacatgttgatattccagGTTTGGACAAGTGCTTGCTTCAAGAGCTGTGAGAGCTGCCCATTGCCTTACTTCAATCCAG
tgttgat putative branch site (score: 9)
tgatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgttctcttgaaactagataccacatgttccttagtattatgtcttgtggctgtgattttagctccgtcccataatctgtacatgttgatattccagGTTTGGACAAGTGCTTGCTTCAAGAGCTGTGAGAGCTGCCCATTGCCTTACTTCAATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - cacatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtaca