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...gagccataggtgggttatagctaatcttggggacagtttgtgtttattctttgaatctatcttctctatcccattgttttcttgactaagaatgcggcagTTATACCTCTTCAACAGGGGAGCGTCGGATACGAGTGCACACTATGGCTACTCCTGTGGTGAACGAGCTGTCAGAGTTGTATAAAGCAGCTGATGTAGGC
species | Physcomitrella patens |
transcript | PP1S570_1V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GAAGACACTTTGTTGTCCACGCAGACGGTCTACTTCCAAGTTGCCCTGCT TTATACCTCTTCAACAGGGGAGCGTCGGATACGAGTGCACACTATGGCTACEST: gi|100388379|gb|BY951981.1|BY951981
genomic: GAAGACACTTTGTTGTCCACGCAGACGGTCTACTTCCAAGTCGCCCTGCTgtatccacct ... aatgcggcagTTATACCTCTTCAACAGGGGAGCGTCGGATACGAGTGCACACTATGGCTAC
EST: GAAGACACTTTGTTGTCCACGCAGACGGTCTACTTCCAAGTCGCCCTGCT TTATACCTCTTCAACAGGGGAGCGTCGGATACGAGTGCACACTATGGCTACEST: gi|162152064|gb|FC328459.1|FC328459
genomic: GAAGACACTTTGTTGTCCACGCAGACGGTCTACTTCCAAGTCGCCCTGCTgtatccacct ... aatgcggcagTTATACCTCTTCAACAGGGGAGCGTCGGATACGAGTGCACACTATGGCTAC
EST: GAAGACACTTTGTTGTCCACGCAGACGGTCTACTTCCAAGTTGCCCTGCT TTATACCTCTTCAACAGGGGAGCGTCEST: gi|67568761|gb|BJ941585.1|BJ941585
genomic: GAAGACACTTTGTTGTCCACGCAGACGGTCTACTTCCAAGTCGCCCTGCTgtatccacct ... aatgcggcagTTATACCTCTTCAACAGGGGAGCGTC
EST: GAAGACACTTTGTTGTCCACGCAGACGGTCTACTTCCAAGTCGCCCTGCT TTATACCTCTTCAACAGGGGAGCGTCGGATACGAGTGCACACTATGGCTAC
genomic: GAAGACACTTTGTTGTCCACGCAGACGGTCTACTTCCAAGTCGCCCTGCTgtatccacct ... aatgcggcagTTATACCTCTTCAACAGGGGAGCGTCGGATACGAGTGCACACTATGGCTAC
attctttgaatctatcttctctatcccattgttttcttgactaagaatgcggcagTTATACCTCTTCAACAGGGGAGCGTCGGATACGAGTGCACACTATGGCTACTCCTGTGGTGAACGAGCTGTCAGAGTTGTATAAAGCAGCTGATGTAGGC
tttcttgac putative branch site
attgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagccataggtgggttatagctaatcttggggacagtttgtgtttattctttgaatctatcttctctatcccattgttttcttgactaagaatgcggcagTTATACCTCTTCAACAGGGGAGCGTCGGATACGAGTGCACACTATGGCTACTCCTGTGGTGAACGAGCTGTCAGAGTTGTATAAAGCAGCTGATGTAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT