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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcaagaacaatatgcatctagaagtaatttttcgctactcagtaaagtccaggcctcactattgttgatgattaatgaaacatgaatccttgtgtgcagAACAACGGAGTCGTTTTTTCCCGTCTGTCTACCAGGATACAATCCAACAGCATTTCTTTATGCATATGTGCACTATCTAAAC

Basic information

species Physcomitrella patens
transcript PP1S55_143V6.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100443287|gb|BY963583.1|BY963583
EST:     AATGATATCTTCCTTCTCAGCAACTATGTGTCCTCCTCTGACTCTTTCAG                         AACAACGGAGTCGTTTTTTCCCGTCTGTCTACCAGGATACAATCCAACAGC
genomic: AATGATATCTTCCTTCTCAGCAACTATGTGTCCTCCTCTGACTCTTTCAGgtgaggttca ... ttgtgtgcagAACAACGGAGTCGTTTTTTCCCGTCTGTCTACCAGGATACAATCCAACAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtccaggcctcactattgttgatgattaatgaaacatgaatccttgtgtgcagAACAACGGAGTCGTTTTTTCCCGTCTGTCTACCAGGATACAATCCAACAGCATTTCTTTATGCATATGTGCACTATCTAAAC
                         gattaat  putative branch site (score: 3)
                                          tccttgt  putative PPT
                          attaatgaaa  TA-rich tract