1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttcgttcttgtttcttttatttggtttacgttaagtgagtggtctatcctggacgtgcttgcgtgttgcatttagtaattgatcattgtgagttgttgcttattatttgcagACGGCATCGGGAGCATGCATGTACGAGAAGTTGAAGGCGCAATCCTTCTTGTTGCCATCTTCATCTCGGGTTGCCTTGAAGTCCACAGCAAGGGTGGCTA
species | Physcomitrella patens |
transcript | PP1S54_134V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGAACGAAATGAAACGTTACGAGGCTTGGCGTGTCTATGGGGCTCTACAG ACGGCATCGGGAGCATGCATGTACGAGAAGTTGAAGGCGCAATCCTTCTTGEST: gi|37825004|gb|BJ583070.1|BJ583070
genomic: AGAACGAAATGAAACGTTACGAGGCTTGGCGTGTCTATGGGGCTCTACAGgttcgttctt ... ttatttgcagACGGCATCGGGAGCATGCATGTACGAGAAGTTGAAGGCGCAATCCTTCTTG
EST: AGAACGAAATGAAACGTTACGAGGCTTGGCGTGTCTATGGGGCTCTACAG ACGGCATCGGGAGCATGCATGTACGAGAAGTTGAAGGCGCAATCCTTCTTGEST: gi|67579391|gb|BJ951512.1|BJ951512
genomic: AGAACGAAATGAAACGTTACGAGGCTTGGCGTGTCTATGGGGCTCTACAGgttcgttctt ... ttatttgcagACGGCATCGGGAGCATGCATGTACGAGAAGTTGAAGGCGCAATCCTTCTTG
EST: AGAACGAAATGAAACGTTACGAGGCTTGGCGTGTCTATGGGGCTCTACAG ACGGCATCGGGAGCATGCATGTACGAGAAGTTGAAGGCGCAATCCTTCTTGEST: gi|67696877|gb|BJ957110.1|BJ957110
genomic: AGAACGAAATGAAACGTTACGAGGCTTGGCGTGTCTATGGGGCTCTACAGgttcgttctt ... ttatttgcagACGGCATCGGGAGCATGCATGTACGAGAAGTTGAAGGCGCAATCCTTCTTG
EST: AGAACGAAATGAAACGTTACGAGGCTTGGCGTGTCTATGGGGCTCTACAG ACGGCATCGGGAGCATGCATGTACGAGAAGTTGAAGGCGCAATCCTTCTTG
genomic: AGAACGAAATGAAACGTTACGAGGCTTGGCGTGTCTATGGGGCTCTACAGgttcgttctt ... ttatttgcagACGGCATCGGGAGCATGCATGTACGAGAAGTTGAAGGCGCAATCCTTCTTG
cttgcgtgttgcatttagtaattgatcattgtgagttgttgcttattatttgcagACGGCATCGGGAGCATGCATGTACGAGAAGTTGAAGGCGCAATCCTTCTTGTTGCCATCTTCATCTCGGGTTGCCTTGAAGTCCACAGCAAGGGTGGCTA
aattgat putative branch site (score: 1)
atttagtaattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgttcttgtttcttttatttggtttacgttaagtgagtggtctatcctggacgtgcttgcgtgttgcatttagtaattgatcattgtgagttgttgcttattatttgcagACGGCATCGGGAGCATGCATGTACGAGAAGTTGAAGGCGCAATCCTTCTTGTTGCCATCTTCATCTCGGGTTGCCTTGAAGTCCACAGCAAGGGTGGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG