1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatttgtattaccatctcttcgatttgcgtgggctccaggtccacattttcgtacttgttgacgcagtttattctattgaaacctctttacaaagccactggtgcccacggttatcttattcgaaggtattttggttagctacattcgttttgtgagacgtacgtttacttctgctaacgtttgtttgtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTATTTCACTTGCTGGACTCAACTTGGCAAAGTGTGCTTACTTGGCCGATG
species | Physcomitrella patens |
transcript | PP1S540_7V6.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|18332766|gb|BJ164779.1|BJ164779
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|18339711|gb|BJ171738.1|BJ171738
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|208371994|gb|DC951971.1|DC951971
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|208386964|gb|DC956933.1|DC956933
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|37838764|gb|BJ596772.1|BJ596772
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|162184759|gb|FC361061.1|FC361061
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: GTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|37837611|gb|BJ595619.1|BJ595619
genomic: GTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|162158558|gb|FC334561.1|FC334561
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|208382292|gb|DC919280.1|DC919280
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|67698272|gb|BJ958505.1|BJ958505
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|162196656|gb|FC373802.1|FC373802
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|208386221|gb|DC952934.1|DC952934
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|37840387|gb|BJ598395.1|BJ598395
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|162244010|gb|FC422339.1|FC422339
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|162217708|gb|FC393800.1|FC393800
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|37849014|gb|BJ607022.1|BJ607022
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|162159044|gb|FC334033.1|FC334033
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|208380215|gb|DC919051.1|DC919051
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|162172937|gb|FC348942.1|FC348942
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|208366815|gb|DC940129.1|DC940129
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|162158559|gb|FC334562.1|FC334562
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|162159030|gb|FC334032.1|FC334032
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|162196657|gb|FC373803.1|FC373803
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|37838717|gb|BJ596725.1|BJ596725
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTEST: gi|162167594|gb|FC343739.1|FC343739
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG AGTGACAATATGACTGACAAATGGCACGTGTACATGACTAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
cattcgttttgtgagacgtacgtttacttctgctaacgtttgtttgtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTATTTCACTTGCTGGACTCAACTTGGCAAAGTGTGCTTACTTGGCCGATG
tgctaac putative branch site (score: 1)
tttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgtattaccatctcttcgatttgcgtgggctccaggtccacattttcgtacttgttgacgcagtttattctattgaaacctctttacaaagccactggtgcccacggttatcttattcgaaggtattttggttagctacattcgttttgtgagacgtacgtttacttctgctaacgtttgtttgtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTATTTCACTTGCTGGACTCAACTTGGCAAAGTGTGCTTACTTGGCCGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG