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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgtattaccatctcttcgatttgcgtgggctccaggtccacattttcgtacttgttgacgcagtttattctattgaaacctctttacaaagccactggtgcccacggttatcttattcgaaggtattttggttagctacattcgttttgtgagacgtacgtttacttctgctaacgtttgtttgtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTATTTCACTTGCTGGACTCAACTTGGCAAAGTGTGCTTACTTGGCCGATG

Basic information

species Physcomitrella patens
transcript PP1S540_7V6.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S540_7V6.2 (Physcomitrella patens), 3'ss of exon 10
lower sequence: LOC_Os02g55420.1 (Oryza sativa), 3'ss of exon 10
gtatttgtattaccatctcttcgatttgcgtgggctccaggtccacattttcgtacttgttgacgcagtttattctattgaaacctctttacaaagccactggtgcccacggttatcttattcgaaggtattttggttagctacatt-cgttttgtgagacgtac-gtttacttctgctaacgtttgtttgtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTATTTCACTTGCTGGACTCAACTTGGCAAAGTGTGCTTACTTGGCCGATG
                                                        |     | ||  |  ||| |     |      || ||      ||  |  | || | |   || | |  |  || | ||  |    ||| | |  ||      |   ||    || |  |  |    || ||||||  | ||||||||| |||||||| |||||||||||| | |||||||| ||||||||  | |||||  | |||||| |   | |||| || || |  ||| | || || |
-------------------------------------------------------gtgacatatgctttaaattttcacagataacacttcca----ttcttctatcgactggtgatttctccatatataatgtgactgcaaacactgcaattcacacaatacactaagtattcttaatttgattcgtttgtatttgcagAGTGATAATATGACCGACAAATGGCACATATACATGACAAAGGATGGGAGAATTTCGTTGGCTGGATTGTCCCTGGCTAAATGCGAGTACCTAGCTGACG

upper sequence: PP1S540_7V6.2 (Physcomitrella patens), 3'ss of exon 10
lower sequence: GRMZM5G836910_T01 (Zea mays), 3'ss of exon 10
gtatttgtattaccatctcttcgatttgcgtgggctccaggtccacattttcgtacttgttgacgcagtttattctattgaaacctctttacaaagccactggtgcccacggttatcttattcgaaggtattttggttagctacat-tcgttttgtgagacgta-cgtttacttctgctaacgtttgtttgtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTATTTCACTTGCTGGACTCAACTTGGCAAAGTGTGCTTACTTGGCCGATG
                                                    |||   | ||   | | || | | ||||      | | ||      | |   |  ||   | | |     |  |    || | |  |  ||||| || | |    | |  || |||  |    |  |  || || || ||    |||||||||||| ||||| || ||||||||  | ||||||||||||||||| || || ||  | ||||| ||   | |||| ||||||| |||  | ||||| |
----------------------------------------------------gtaac-gctgcttccgcttgtgccattgtgcagacatcacgcgctaaatcaagttca--atcaccggtcacacactctttgttgaaacatacatatcatctacaaaaaaataacgtaaatgcataatttcgctttttcgt--ctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGGATCTCGTTAGCTGGGCTGTCCCTGGCTAAGTGTGATTATCTTGCCGACG

upper sequence: PP1S540_7V6.2 (Physcomitrella patens), 3'ss of exon 10
lower sequence: GLYMA14G13480.1 (Glycine max), 3'ss of exon 10
gtatttg--tattaccatctcttcgatttgcgtgggctccaggtccacattttcgtacttgttgacgcagtttattctattgaaacctctttacaaagccactggtgcccacggttatcttattcgaaggtattttggttagctacattcgttttgtgagacgtacgtttacttctgctaacgtttgtttgtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTATTTCACTTGCTGGACTCAACTTGGCAAAGTGTGCTTACTTGGCCGATG
||| |||  || |   ||  |  |   |||| || | || |  |      |||  |||    ||  |     ||||  |||||     ||  |  ||  ||  |  |              |||  |  ||||| |  | |   ||  || | || | | |              || || | | ||| | |  |  ||||||||||| |||||  |||| |||||||| |||||||| ||||||||  | ||||| || || ||| |    ||||| || ||||  ||| | || ||||
gtaattgactactgttattacaacttcttgcatgtgatcaacttgtg-gcttttatacactatgttgagtcctatttcattga-----ctaaatgaaaacatcgtcg--------------attttacagtattgtaat-attgactgtcttgttcttaaa--------------tgatatcttgtgtctctcat--cagAGTGACAACATGACAAACAAGTGGCACGTATACATGACAAAGGATGGAAGGATTTCCCTGGCAGGATTGTCATTGGCTAAATGTGAATACCTTGCAGATG

upper sequence: PP1S540_7V6.2 (Physcomitrella patens), 3'ss of exon 10
lower sequence: GLYMA17G33050.4 (Glycine max), 3'ss of exon 10
gtatttgtattaccatctcttcgatttgcgtgggctccaggtccacattttcgtacttgttgacgcagtttattctattgaaacctctt-tacaa-agccactggtgcccacggttatcttattcgaaggtattttggttagctacattcgttttgtgagacgtacgtttacttctgctaacgtttgtttgtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTATTTCACTTGCTGGACTCAACTTGGCAAAGTGTGCTTACTTGGCCGATG
                                                            | |     || ||  ||||   || ||||  |    | | ||| ||| |     |   ||   | ||      |||  ||  ||| ||     |  |||    || |||    |    | |  | |  |        ||||||||||| |||||  |||| |||||||| |||||||| ||||||||  | ||||| || || ||| |    ||||| || || |  ||| | || ||||
-----------------------------------------------------------gtaat-tgattcatgttattatgacttcttgcatgttatcaacttgtggcttttatacactatgttgagtcctatttcattgactatatcaacatattgac---tatgttgttcttaaatgatatctcat--------cagAGTGACAACATGACAAACAAGTGGCACGTATACATGACAAAGGATGGAAGGATTTCCCTGGCAGGATTGTCGTTGGCTAAATGCGAATACCTTGCGGATG

upper sequence: PP1S540_7V6.2 (Physcomitrella patens), 3'ss of exon 10
lower sequence: EFJ26197 (Selaginella moellendorffii), 3'ss of exon 8
gtatttgtattaccatctcttcgatttgcgtgggctccaggtccacattttcgtacttgttgacgcagtttattctattgaaacctctttacaaagccactggtgcccacggttatcttattcgaaggtattttggttagctacattcgttttgtgagacgtacgtttacttctgctaacgtttgtttgtggtgg--cagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTATTTCACTTGCTGGACTCAACTTGGCAAAGTGTGCTTACTTGGCCGATG
                                                                                                                                     |    ||||      |||||  || || |   |  |  |   ||    |   | ||  ||    ||||||||||| |||||||| ||||||||||| |||||||| |||||||| || |||||  | |||||| | ||  | || |||||||  ||| | || || |
------------------------------------------------------------------------------------------------------------------------------------gtaaaaagctctcgaagtttt-cgaaacctggttggatcttcactgtgatcgctgtgatgttttccagAGTGACAACATGACTGATAAATGGCACGTTTACATGACAAAGGATGGACGAATTTCCTTGGCTGGATTGAATCTAGCCAAGTGTGACTACCTTGCGGACG

upper sequence: PP1S540_7V6.2 (Physcomitrella patens), 3'ss of exon 10
lower sequence: EFJ05582 (Selaginella moellendorffii), 3'ss of exon 8
gtatttgtattaccatctcttcgatttgcgtgggctccaggtccacattttcgtacttgttgacgcagtttattctattgaaacctctttacaaagccactggtgcccacggttatcttattcgaaggtattttggttagctacattcgttttgtgagacgtacgtttacttctgctaacgtttgtttgtggtgg--cagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTATTTCACTTGCTGGACTCAACTTGGCAAAGTGTGCTTACTTGGCCGATG
                                                                                                                                     |    ||||      |||||  || || |   |  |  |   ||    |   | ||  ||    ||||||||||| |||||||| ||||||||||| |||||||| |||||||| || |||||  | |||||| | ||  | || |||||||  ||| | || || |
------------------------------------------------------------------------------------------------------------------------------------gtaaaaagctctcgaagtttt-cgaaacctggttggatcttcactgtgatcgctgtgatgtttttcagAGTGACAACATGACTGATAAATGGCACGTTTACATGACAAAGGATGGACGAATTTCCTTGGCTGGATTGAATCTAGCCAAGTGTGACTACCTTGCGGACG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208386591|gb|DC952772.1|DC952772
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|18332766|gb|BJ164779.1|BJ164779
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|18339711|gb|BJ171738.1|BJ171738
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|208371994|gb|DC951971.1|DC951971
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|208386964|gb|DC956933.1|DC956933
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|37838764|gb|BJ596772.1|BJ596772
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|162184759|gb|FC361061.1|FC361061
EST:     GTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: GTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|37837611|gb|BJ595619.1|BJ595619
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|162158558|gb|FC334561.1|FC334561
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|208382292|gb|DC919280.1|DC919280
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|67698272|gb|BJ958505.1|BJ958505
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|162196656|gb|FC373802.1|FC373802
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|208386221|gb|DC952934.1|DC952934
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|37840387|gb|BJ598395.1|BJ598395
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|162244010|gb|FC422339.1|FC422339
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|162217708|gb|FC393800.1|FC393800
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|37849014|gb|BJ607022.1|BJ607022
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|162159044|gb|FC334033.1|FC334033
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|208380215|gb|DC919051.1|DC919051
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|162172937|gb|FC348942.1|FC348942
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|208366815|gb|DC940129.1|DC940129
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|162158559|gb|FC334562.1|FC334562
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|162159030|gb|FC334032.1|FC334032
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|162196657|gb|FC373803.1|FC373803
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|37838717|gb|BJ596725.1|BJ596725
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT
EST: gi|162167594|gb|FC343739.1|FC343739
EST:     TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAG                         AGTGACAATATGACTGACAAATGGCACGTGTACATGACTAAGGATGGTCGT
genomic: TTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 20 (upstream exon), 34 (downstream exon)
Score: 12

GTACGATGAACTTTCTACCAAGGACAAGAGTGGCAAAGATTGGTCTTTCGTTCTCAAGCAAATTGGAATGTTTTCATTTACTGGTCTAAACAAGGCACAGgtatttgtat ... gtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTATTTCACTTGCTGGACTCAACTTGGCAAAGTGTGCTTACTTGGCCGATG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattcgttttgtgagacgtacgtttacttctgctaacgtttgtttgtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTATTTCACTTGCTGGACTCAACTTGGCAAAGTGTGCTTACTTGGCCGATG
                              tgctaac  putative branch site (score: 12)
                      tttactt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatttgtattaccatctcttcgatttgcgtgggctccaggtccacattttcgtacttgttgacgcagtttattctattgaaacctctttacaaagccactggtgcccacggttatcttattcgaaggtattttggttagctacattcgttttgtgagacgtacgtttacttctgctaacgtttgtttgtggtggcagAGTGACAATATGACTGACAAATGGCACGTGTACATGACCAAGGATGGTCGTATTTCACTTGCTGGACTCAACTTGGCAAAGTGTGCTTACTTGGCCGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG