1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...agattcgactgttatttcatactcaagtagtttcacatgagttcgattctcgagttgccccctctgacagccagctttacttgttttgcgatgcatgcagGATGCTGTGGATTGTCCAGAGTGGCTTGTTCCCTTCCAGTGCTTCAAATCTTTAGCAGCAGAG
species | Physcomitrella patens |
transcript | PP1S49_100V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTCCCATCATCAACACCTTTATGGAATTCAGTACGAGTTTCATTTAGAG GATGCTGTGGATTGTCCAGAGTGGCTTGTTCCCTTCCAGTGCTTCAAATCTEST: gi|37851526|gb|BJ609534.1|BJ609534
genomic: ATTCCCATCATCAACACC-TTATGGAATTCAGTACGAGTTTCATTTAGAGgtacgatcca ... atgcatgcagGATGCTGTGGATTGTCCAGAGTGGCTTGTTCCCTTCCAGTGCTTCAAATCT
EST: ATTCCCCATCATCAACACCTTATGGAATTCAGTACGAGTTTCATTTAGAG GATGCTGTGGATTGTCCAGAGTGGCTTGTTCCCTTCCAGTGCTTCAAATCTEST: gi|208371348|gb|DC944512.1|DC944512
genomic: ATT-CCCATCATCAACACCTTATGGAATTCAGTACGAGTTTCATTTAGAGgtacgatcca ... atgcatgcagGATGCTGTGGATTGTCCAGAGTGGCTTGTTCCCTTCCAGTGCTTCAAATCT
EST: AATTCCCATCATCAACACCTTATGGAATTCAGTACGAGTTTCATTTAGAG GATGCTGTGGATTGTCCAGAGTGGCTTGTTCCCTTCCAGTGCTTCAAATCTEST: gi|162185815|gb|FC362371.1|FC362371
genomic: AATTCCCATCATCAACACCTTATGGAATTCAGTACGAGTTTCATTTAGAGgtacgatcca ... atgcatgcagGATGCTGTGGATTGTCCAGAGTGGCTTGTTCCCTTCCAGTGCTTCAAATCT
EST: TATGGAATTCAGTACGAGTTTCATTTAGAG GATGCTGTGGATTGTCCAGAGTGGCTTGTTCCCTTCCAGTGCTTCAAATCT
genomic: TATGGAATTCAGTACGAGTTTCATTTAGAGgtacgatcca ... atgcatgcagGATGCTGTGGATTGTCCAGAGTGGCTTGTTCCCTTCCAGTGCTTCAAATCT
attctcgagttgccccctctgacagccagctttacttgttttgcgatgcatgcagGATGCTGTGGATTGTCCAGAGTGGCTTGTTCCCTTCCAGTGCTTCAAATCTTTAGCAGCAGAG
ctctgac putative branch site (score: 7)
tttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agattcgactgttatttcatactcaagtagtttcacatgagttcgattctcgagttgccccctctgacagccagctttacttgttttgcgatgcatgcagGATGCTGTGGATTGTCCAGAGTGGCTTGTTCCCTTCCAGTGCTTCAAATCTTTAGCAGCAGAG
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